CV712374

Overview
NameCV712374
Unique NameCV712374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712374 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.798e-13
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = -1
Query:  282 VGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 422
            +G++ SSIFD KAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H++K
Sbjct:  286 LGNNNSSIFDIKAGISLNPNFVKLVSWYDNEWGYSRRVLDLLEHVAK 332          
BLAST of CV712374 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.798e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = -1
Query:  282 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 425
            F+G   SSIFD KAGI LS  FVKL+SWYDNE+GYSTRVVDL+ H++K
Sbjct:  285 FLGSDYSSIFDQKAGILLSPTFVKLISWYDNEFGYSTRVVDLLEHVAK 332          
BLAST of CV712374 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.798e-13
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = -1
Query:  288 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 425
            F+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  283 FLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CV712374 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.798e-13
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = -1
Query:  288 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 425
            F+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  283 FLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CV712374 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.654e-13
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  288 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 425
            F+ D+ SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  345 FLSDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSNRVVDLVRYM 390          
BLAST of CV712374 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.773e-13
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = -1
Query:  282 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 419
            G++ SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ +++K
Sbjct:  287 GNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVAK 332          
BLAST of CV712374 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.773e-13
Identity = 32/48 (66.67%), Postives = 41/48 (85.42%), Query Frame = -1
Query:  282 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 425
            F+G + SS+FDAKAGI L+ KFVKL+SWYDNE+GYS RV DLI +++K
Sbjct:  285 FLGSTESSVFDAKAGIPLNDKFVKLISWYDNEYGYSRRVCDLIAYVAK 332          
BLAST of CV712374 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 4.773e-13
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = -1
Query:  282 DSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 416
            D  SS FDAKAGIAL+K FVK++SWYDNE+GYS RVVDLIV++SK
Sbjct:  287 DPHSSTFDAKAGIALNKNFVKVMSWYDNEYGYSRRVVDLIVYVSK 331          
BLAST of CV712374 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.773e-13
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = -1
Query:  285 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 425
            F+GD+ S+IFDA AGI LS KFVK+V+WYDNE+GYS RVVDL+ H++
Sbjct:  283 FLGDTHSTIFDASAGIQLSPKFVKVVAWYDNEYGYSERVVDLVEHVA 329          
BLAST of CV712374 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.773e-13
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  288 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 425
            F  D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  283 FFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
The following BLAST results are available for this feature:
BLAST of CV712374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
G3P_TRIAT2.798e-1368.09Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_DEBHA2.798e-1370.83Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P2_DROPS2.798e-1369.57Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_DROME2.798e-1369.57Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3PT_BOVIN3.654e-1371.74Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_PODAN4.773e-1369.57Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_CRYCU4.773e-1366.67Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P1_TRIKO4.773e-1375.56Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P1_KLULA4.773e-1368.09Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P1_DROME4.773e-1369.57Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001E19_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712374 ID=CV712374; Name=CV712374; organism=Citrus sinensis; type=EST; length=425bp
CCCCCTTTTTTTTTTTTAAAAGCAAGTTTCCAATAGACAATTGTTTTCTC
GCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGG
AAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCT
TGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAACACAAACAC
CACATTTAGCACAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACA
TACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATC
AAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGAC
AAGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGA
TACTTGACCTACTGTCACCAACAAA
back to top