EY660021

Overview
NameEY660021
Unique NameEY660021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660021_ssr515 microsatellite EY660021_ssr515:515..524. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H3L1_LILLO (Histone H3-like 1 OS=Lilium longiflorum GN=gH3 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 4.008e-14
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 2 
Query:   89 KKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            ++P R+R   V LREIR+ Q+S   LI   PF RLVRE+A +F  D RF +   + L+E  E  LV  F +  +C+IHAKR+ I  KD +
Sbjct:   49 RRPRRFRPGTVALREIRRIQRSNVPLIPHSPFMRLVRELAAEFLDDCRFAAETFIMLKEVVEDELVNHFGNVQICSIHAKRIIITVKDFK 138
The following BLAST results are available for this feature:
BLAST of EY660021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
H3L1_LILLO4.008e-1444.44Histone H3-like 1 OS=Lilium longiflorum GN=gH3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660021 ID=EY660021; Name=EY660021; organism=Citrus sinensis; type=EST; length=560bp
GTGGACGCCTGCGGTCCGGTCCGGAATTCGTCCTCACGCGCGCGTCCGAN
AAGGNCTTTCATNAAGAGGGGNNAGNANNGGTGGTGTTAAGAAGCCTCAT
CGTTACCGTTTTGCACCTGTCAACCTTCGAGAAATTCGCAAGTACCAGAA
GAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAGAGACTTGTTCGTG
AAATTGCTCAGGACTTTAAGACTGATCTGCGTTTCCAGAGCCATGCAGTG
CTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTTCGAGGA
CACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGCCCAAGG
ACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCGTAATTG
CTGGTTGCTTCAATTTGAATGACTGGAAGGGAAGGGGGCAGTTGTAATGT
GTTAATTTGTACGTGGGGGATTGGTGGGGGGGTAGAATACGTGTCTANCT
CTTGTTAATTAGCAATATATATATAAATGCAAGCCTGTGTCTGAAAAAGA
AGAAGAAAAA
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