EY660021

Overview
NameEY660021
Unique NameEY660021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H31_HUMAN (Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 2.945e-41
Identity = 85/93 (91.40%), Postives = 87/93 (93.55%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H31_BOVIN (Histone H3.1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 2.945e-41
Identity = 85/93 (91.40%), Postives = 87/93 (93.55%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H33_CHLRE (Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=ch3-IV PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 3.846e-41
Identity = 88/112 (78.57%), Postives = 93/112 (83.04%), Query Frame = 2 
Query:   23 GIRPHARVRXGLSXRGXXXGGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            G  P  ++    + +    GGVKKPHRYR   V LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEAAEAYLVGLFEDTNLCAI AKRVTIMPKDIQ
Sbjct:   14 GKAPRKQLATKAARKTPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVVALQEAAEAYLVGLFEDTNLCAITAKRVTIMPKDIQ 125
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H32_WHEAT (Histone H3.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 3.846e-41
Identity = 86/93 (92.47%), Postives = 87/93 (93.55%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHR+R   V LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H32_PEA (Histone H3.2 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 3.846e-41
Identity = 86/93 (92.47%), Postives = 87/93 (93.55%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHR+R   V LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H32_ONOVI (Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 3.846e-41
Identity = 86/93 (92.47%), Postives = 87/93 (93.55%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHR+R   V LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H32_MEDSA (Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 3.846e-41
Identity = 86/93 (92.47%), Postives = 87/93 (93.55%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHR+R   V LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H3_STRDR (Histone H3, embryonic OS=Strongylocentrotus droebachiensis PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 6.560e-41
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H3_SOLST (Histone H3, embryonic OS=Solaster stimpsoni PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 6.560e-41
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H3_PYCHE (Histone H3, embryonic OS=Pycnopodia helianthoides PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 6.560e-41
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
The following BLAST results are available for this feature:
BLAST of EY660021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
H31_HUMAN2.945e-4191.40Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2[more]
H31_BOVIN2.945e-4191.40Histone H3.1 OS=Bos taurus PE=1 SV=2[more]
H33_CHLRE3.846e-4178.57Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=... [more]
H32_WHEAT3.846e-4192.47Histone H3.2 OS=Triticum aestivum PE=1 SV=2[more]
H32_PEA3.846e-4192.47Histone H3.2 OS=Pisum sativum PE=1 SV=2[more]
H32_ONOVI3.846e-4192.47Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2[more]
H32_MEDSA3.846e-4192.47Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=... [more]
H3_STRDR6.560e-4190.32Histone H3, embryonic OS=Strongylocentrotus droeba... [more]
H3_SOLST6.560e-4190.32Histone H3, embryonic OS=Solaster stimpsoni PE=2 S... [more]
H3_PYCHE6.560e-4190.32Histone H3, embryonic OS=Pycnopodia helianthoides ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660021 ID=EY660021; Name=EY660021; organism=Citrus sinensis; type=EST; length=560bp
GTGGACGCCTGCGGTCCGGTCCGGAATTCGTCCTCACGCGCGCGTCCGAN
AAGGNCTTTCATNAAGAGGGGNNAGNANNGGTGGTGTTAAGAAGCCTCAT
CGTTACCGTTTTGCACCTGTCAACCTTCGAGAAATTCGCAAGTACCAGAA
GAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAGAGACTTGTTCGTG
AAATTGCTCAGGACTTTAAGACTGATCTGCGTTTCCAGAGCCATGCAGTG
CTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTTCGAGGA
CACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGCCCAAGG
ACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCGTAATTG
CTGGTTGCTTCAATTTGAATGACTGGAAGGGAAGGGGGCAGTTGTAATGT
GTTAATTTGTACGTGGGGGATTGGTGGGGGGGTAGAATACGTGTCTANCT
CTTGTTAATTAGCAATATATATATAAATGCAAGCCTGTGTCTGAAAAAGA
AGAAGAAAAA
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