EY660021

Overview
NameEY660021
Unique NameEY660021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660021_ssr515 microsatellite EY660021_ssr515:515..524. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H332_CAEEL (Histone H3.3 type 2 OS=Caenorhabditis elegans GN=his-72 PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 4.252e-40
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 2
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+Q
Sbjct:   34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQ 126          
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H31T_HUMAN (Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 4.252e-40
Identity = 82/93 (88.17%), Postives = 86/93 (92.47%), Query Frame = 2
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIR+YQKSTELLIRKLPFQRL+REIAQDFKTDLRFQS AV+ALQEA E+YLVGLFEDTNLC IHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTIMPKDIQ 126          
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H3_STRPU (Histone H3, embryonic OS=Strongylocentrotus purpuratus PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 5.553e-40
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 2
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLV LFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVRLFEDTNLCAIHAKRVTIMPKDIQ 126          
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H33_PONAB (Histone H3.3 OS=Pongo abelii PE=2 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 5.553e-40
Identity = 83/93 (89.25%), Postives = 86/93 (92.47%), Query Frame = 2
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIR+YQKSTELLIRKLPFQRL REIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLAREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126          
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H32_LILLO (Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 5.553e-40
Identity = 83/93 (89.25%), Postives = 86/93 (92.47%), Query Frame = 2
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHR+R   V LREIRKYQKSTELLIRKLPFQRLVREIAQDFK DLRFQS AV ALQEA+E+YLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKADLRFQSSAVAALQEASESYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126          
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H3_EUPCR (Histone H3 OS=Euplotes crassus PE=3 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 1.368e-38
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 2
Query:   83 GVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            G+KKPHRYR   V LREIR+YQKSTELLIRKLPFQRLVREIAQ+FK DLRFQS AVLALQEAAEAYLV LFEDTNLCAIHAKRVTIMPKD+Q
Sbjct:   35 GMKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQEFKGDLRFQSSAVLALQEAAEAYLVSLFEDTNLCAIHAKRVTIMPKDMQ 126          
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H32_USTMA (Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 1.786e-38
Identity = 81/92 (88.04%), Postives = 84/92 (91.30%), Query Frame = 2
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 355
            GGVKKPHRYR   V LREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQE+AEAYLV LFEDTNL AIHAKRVTI PKDI
Sbjct:   34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQESAEAYLVSLFEDTNLAAIHAKRVTIQPKDI 125          
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.333e-38
Identity = 80/93 (86.02%), Postives = 83/93 (89.25%), Query Frame = 2
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLV LFEDTNLCAIH KRVTI PKD+Q
Sbjct:   34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQ 126          
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H33_SCHPO (Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 3.047e-38
Identity = 80/93 (86.02%), Postives = 83/93 (89.25%), Query Frame = 2
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLV LFEDTNLCAIH KRVTI PKD+Q
Sbjct:   34 GGVKKPHRYRPPTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQ 126          
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H31_LODEL (Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=HHT1 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.980e-38
Identity = 80/93 (86.02%), Postives = 84/93 (90.32%), Query Frame = 2
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRY+   V LREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI  KDIQ
Sbjct:   34 GGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQ 126          
The following BLAST results are available for this feature:
BLAST of EY660021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
H332_CAEEL4.252e-4089.25Histone H3.3 type 2 OS=Caenorhabditis elegans GN=h... [more]
H31T_HUMAN4.252e-4088.17Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3[more]
H3_STRPU5.553e-4089.25Histone H3, embryonic OS=Strongylocentrotus purpur... [more]
H33_PONAB5.553e-4089.25Histone H3.3 OS=Pongo abelii PE=2 SV=3[more]
H32_LILLO5.553e-4089.25Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV... [more]
H3_EUPCR1.368e-3888.04Histone H3 OS=Euplotes crassus PE=3 SV=3[more]
H32_USTMA1.786e-3888.04Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3[more]
H31_SCHPO2.333e-3886.02Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=... [more]
H33_SCHPO3.047e-3886.02Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 ... [more]
H31_LODEL3.980e-3886.02Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660021 ID=EY660021; Name=EY660021; organism=Citrus sinensis; type=EST; length=560bp
GTGGACGCCTGCGGTCCGGTCCGGAATTCGTCCTCACGCGCGCGTCCGAN
AAGGNCTTTCATNAAGAGGGGNNAGNANNGGTGGTGTTAAGAAGCCTCAT
CGTTACCGTTTTGCACCTGTCAACCTTCGAGAAATTCGCAAGTACCAGAA
GAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAGAGACTTGTTCGTG
AAATTGCTCAGGACTTTAAGACTGATCTGCGTTTCCAGAGCCATGCAGTG
CTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTTCGAGGA
CACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGCCCAAGG
ACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCGTAATTG
CTGGTTGCTTCAATTTGAATGACTGGAAGGGAAGGGGGCAGTTGTAATGT
GTTAATTTGTACGTGGGGGATTGGTGGGGGGGTAGAATACGTGTCTANCT
CTTGTTAATTAGCAATATATATATAAATGCAAGCCTGTGTCTGAAAAAGA
AGAAGAAAAA
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