CV712266

Overview
NameCV712266
Unique NameCV712266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22
Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = -1
Query:  167 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGLKEQMTPVSEYEDKL 520
            +EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P ++SFGF + LR  T GQAF   VF HW ++  DPL+                A + ++  R+RKGL E ++    ++D +
Sbjct:  828 MEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22
Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = -1
Query:  167 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGLKEQMTPVSEYEDKL 520
            +EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P ++SFGF + LR  T GQAF   VF HW ++  DPL+                A + ++  R+RKGL E ++    ++D +
Sbjct:  828 MEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22
Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = -1
Query:  167 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGLKEQMTPVSEYEDKL 520
            +EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P ++SFGF + LR  T GQAF   VF HW ++  DPL+                A + ++  R+RKGL E ++    ++D +
Sbjct:  828 MEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22
Identity = 50/130 (38.46%), Postives = 80/130 (61.54%), Query Frame = -1
Query:  167 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQ------------ASQLVLDIRKRKGLKEQMTPVSEYEDKL 520
            +EPVY+VE+ AP  +L  IY +L ++RGHV +++ RPG+PLY ++A +PV++S GF + LR  T GQA  Q VFDHW ++  DPL+   +            A   ++  R+RKGL E ++    ++ ++
Sbjct:  841 MEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKGLVEDVSTTRYFDQEM 970          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: ETUD1_MOUSE (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.069e-17
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = -1
Query:  209 VYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPL----------------EPGSQASQLVLDIRKRKGL 511
            +Y  +I A    LG +Y+VL+++ G V +E  + GT ++ IKA LPV ESFGF+  +R  TSG A PQ VF HW+++ SDP                 +  +QA + +  +RKRKGL
Sbjct:  991 MYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1107          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: ETUD1_HUMAN (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.647e-17
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = -1
Query:  209 VYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPL----------------EPGSQASQLVLDIRKRKGL 511
            +Y  +I A    LG +Y+VL+++ G V +E  + GT ++ IKA LPV ESFGF+  +R  TSG A PQ VF HW+++ SDP                 +  +QA + +  +RKRKGL
Sbjct:  984 MYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1100          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.560e-16
Identity = 43/128 (33.59%), Postives = 73/128 (57.03%), Query Frame = -1
Query:  176 VYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPL----------------EPGSQASQLVLDIRKRKGLKEQMTPVSEYE 511
            +Y  ++QA  + LG +Y V++++RG V +E  + GTP + +KA +PVVESFGF+  +   TSG A+PQ +F  ++M+  +P                 +  + A + +L++RKRKGL  +   V + E
Sbjct:  866 MYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENPFWVPTTEEELEDLGELADRENIAKRYMLNVRKRKGLLVEQKIVEKAE 993          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: RIA1_YEAST (Ribosome assembly protein 1 OS=Saccharomyces cerevisiae GN=RIA1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.204e-12
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  269 VYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDP 511
            +Y  +IQ     LG +Y+V+ Q+ G +  E  + GTP + I+A++PVVE+FG S  +R  TSG A PQ VF  ++ +  DP
Sbjct:  975 IYSCDIQTSVDVLGKVYAVILQRHGKIISEEMKEGTPFFQIEAHVPVVEAFGLSEDIRKRTSGAAQPQLVFSGFECIDLDP 1055          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: EF2_METB6 (Elongation factor 2 OS=Methanoregula boonei (strain 6A8) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.156e-11
Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = -1
Query:  179 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPVSEY 520
            LEPV  ++I  P   +G   S +  +RG VF+ MQ  G  +  +    PV E FGF+  +R+AT G+A     F  ++++      P +    +V+ IRKRKGLKEQM   S+Y
Sbjct:  623 LEPVQKIQISVPMDQMGAATSQIQGRRGQVFD-MQSEGDTI-TVVGKAPVAELFGFAGDIRSATEGRAMWNTEFAGFELV------PNNLVKDVVVAIRKRKGLKEQMPTPSDY 728          
The following BLAST results are available for this feature:
BLAST of CV712266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
U5S1_HUMAN1.377e-2238.46116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_CHICK1.377e-2238.46116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN1.377e-2238.46116 kDa U5 small nuclear ribonucleoprotein compone... [more]
SN114_SCHPO1.377e-2238.46114 kDa U5 small nuclear ribonucleoprotein compone... [more]
ETUD1_MOUSE5.069e-1739.32Elongation factor Tu GTP-binding domain-containing... [more]
ETUD1_HUMAN8.647e-1739.32Elongation factor Tu GTP-binding domain-containing... [more]
RIA1_SCHPO9.560e-1633.59Ribosome assembly protein 1 OS=Schizosaccharomyces... [more]
RIA1_YEAST2.204e-1240.74Ribosome assembly protein 1 OS=Saccharomyces cerev... [more]
EF2_METB64.156e-1136.84Elongation factor 2 OS=Methanoregula boonei (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001C11_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712266 ID=CV712266; Name=CV712266; organism=Citrus sinensis; type=EST; length=871bp
TGAATGGAATAACAGAATTTGAACGTCCAAACTTAAATAAACAGAGGCTA
CAACAACAAACTCAGATAAGTCAACATTGTTTCCTTCAAAGAAAAAAACA
GAACAAAACCAAAGGCAGCAAAAAATGAATCTAGTCGCCAGCAATCGATA
ATGGCAAAAGCGCTTACAGCTTGTCTTCATATTCAGAGACGGGGGTCATC
TGTTCCTTCAAACCCTTCCTCTTCCTAATATCCAAAACAAGCTGTGAAGC
CTGGGATCCCGGCTCCAATGGATCAGATGACATCATGTCCCAGTGATCAA
ACACACATTGAGGGAATGCCTGTCCAGAGGTTGCAGCTCTCAAAGTGCTG
GAAAATCCAAAAGACTCAACGACCGGGAGGTATGCCTTGATGTTATAAAG
TGGGGTACCAGGTCTCTGCATCTCCTCAAAAACGTGACCACGTTTCTGGT
TAAGAACACTGTAAATACCACCAAGTGCCTGTTCAGGAGCTTGGATTTCC
ACCAAGTAGACAGGCTCAAGCTTGATCGCCTTGCATCTTTGCATATTGAT
TATCCAATGTTGTTTGAGCTACGTAATAATGCGGCTGAGCGGGTTTCCCA
CTGTGGAGTTCTTGAGTTTATTGCAGAGGAAGGCATGATCTATATGCCAT
ACTGGATGATGGAGAACCTGCTTTTACAAGAGGGAGATATTGTGCGAGTG
AAAAATGTGACACTTCCAAAGGGAACATATGTCAAACTTCAACCTCACAC
AAAGGACTTTCTCGATATTTCTAATCACAAAGCCATCTTGGAGACGACAT
TAAGGAATTATTCCTGCTTGACCACTGGGGACAGTATTATGGTGGCATAT
AACAATAAGAAATATTACATT
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