CV712266
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22 Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = -1 Query: 167 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGLKEQMTPVSEYEDKL 520 +EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P ++SFGF + LR T GQAF VF HW ++ DPL+ A + ++ R+RKGL E ++ ++D + Sbjct: 828 MEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22 Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = -1 Query: 167 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGLKEQMTPVSEYEDKL 520 +EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P ++SFGF + LR T GQAF VF HW ++ DPL+ A + ++ R+RKGL E ++ ++D + Sbjct: 828 MEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22 Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = -1 Query: 167 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGLKEQMTPVSEYEDKL 520 +EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P ++SFGF + LR T GQAF VF HW ++ DPL+ A + ++ R+RKGL E ++ ++D + Sbjct: 828 MEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22 Identity = 50/130 (38.46%), Postives = 80/130 (61.54%), Query Frame = -1 Query: 167 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQ------------ASQLVLDIRKRKGLKEQMTPVSEYEDKL 520 +EPVY+VE+ AP +L IY +L ++RGHV +++ RPG+PLY ++A +PV++S GF + LR T GQA Q VFDHW ++ DPL+ + A ++ R+RKGL E ++ ++ ++ Sbjct: 841 MEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKGLVEDVSTTRYFDQEM 970
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: ETUD1_MOUSE (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.069e-17 Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = -1 Query: 209 VYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPL----------------EPGSQASQLVLDIRKRKGL 511 +Y +I A LG +Y+VL+++ G V +E + GT ++ IKA LPV ESFGF+ +R TSG A PQ VF HW+++ SDP + +QA + + +RKRKGL Sbjct: 991 MYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1107
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: ETUD1_HUMAN (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 8.647e-17 Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = -1 Query: 209 VYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPL----------------EPGSQASQLVLDIRKRKGL 511 +Y +I A LG +Y+VL+++ G V +E + GT ++ IKA LPV ESFGF+ +R TSG A PQ VF HW+++ SDP + +QA + + +RKRKGL Sbjct: 984 MYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1100
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.560e-16 Identity = 43/128 (33.59%), Postives = 73/128 (57.03%), Query Frame = -1 Query: 176 VYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPL----------------EPGSQASQLVLDIRKRKGLKEQMTPVSEYE 511 +Y ++QA + LG +Y V++++RG V +E + GTP + +KA +PVVESFGF+ + TSG A+PQ +F ++M+ +P + + A + +L++RKRKGL + V + E Sbjct: 866 MYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENPFWVPTTEEELEDLGELADRENIAKRYMLNVRKRKGLLVEQKIVEKAE 993
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: RIA1_YEAST (Ribosome assembly protein 1 OS=Saccharomyces cerevisiae GN=RIA1 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.204e-12 Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = -1 Query: 269 VYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDP 511 +Y +IQ LG +Y+V+ Q+ G + E + GTP + I+A++PVVE+FG S +R TSG A PQ VF ++ + DP Sbjct: 975 IYSCDIQTSVDVLGKVYAVILQRHGKIISEEMKEGTPFFQIEAHVPVVEAFGLSEDIRKRTSGAAQPQLVFSGFECIDLDP 1055
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: EF2_METB6 (Elongation factor 2 OS=Methanoregula boonei (strain 6A8) GN=fusA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.156e-11 Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = -1 Query: 179 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPVSEY 520 LEPV ++I P +G S + +RG VF+ MQ G + + PV E FGF+ +R+AT G+A F ++++ P + +V+ IRKRKGLKEQM S+Y Sbjct: 623 LEPVQKIQISVPMDQMGAATSQIQGRRGQVFD-MQSEGDTI-TVVGKAPVAELFGFAGDIRSATEGRAMWNTEFAGFELV------PNNLVKDVVVAIRKRKGLKEQMPTPSDY 728 The following BLAST results are available for this feature:
BLAST of CV712266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 49
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712266 ID=CV712266; Name=CV712266; organism=Citrus sinensis; type=EST; length=871bpback to top |