CV712205

Overview
NameCV712205
Unique NameCV712205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712205 vs. ExPASy Swiss-Prot
Match: COPG2_MOUSE (Coatomer subunit gamma-2 OS=Mus musculus GN=Copg2 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.342e-28
Identity = 74/204 (36.27%), Postives = 110/204 (53.92%), Query Frame = 2
Query:    5 EQLLENVTVIVDXXXXXXXXXXXXKPLRSLPYDSPGQTFVAFEKPEGVPAV--GKFSNMLRFIVKEVDPTTXXXXXXXXXXXYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGI-DGPKEVAMKLAVRSEDDNVSDMI 607
            +QLLE VTV ++             P  SLPY+ PG  +     P+  P    G FS  ++F V++ DP T           Y LEDLEV  +D++ K+   NF  AWE +G  FE+ + + L   ++L EAV+ +I+ LGMQPCE ++ V  N  SH+  L+GV+ G   +LVR +  + DG   V M++ VRS++    D+I
Sbjct:  668 DQLLEKVTVQMEPSDSYEVLCCIPAP--SLPYNQPGICYTLVRLPDEDPTAVAGTFSCTMKFTVRDCDPNTGVPDEDGYDDEYVLEDLEVTVSDHIQKILKPNFAAAWEEVGDAFEKEETFALSSTKTLEEAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALADG---VTMQVTVRSKERTPVDVI 866          
BLAST of CV712205 vs. ExPASy Swiss-Prot
Match: COPG2_TAKRU (Coatomer subunit gamma-2 OS=Takifugu rubripes GN=copg2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.111e-28
Identity = 75/204 (36.76%), Postives = 106/204 (51.96%), Query Frame = 2
Query:    5 EQLLENVTVIVDXXXXXXXXXXXXKPLRSLPYDSPGQTFVAFEKPEGVPAVGK--FSNMLRFIVKEVDPTTXXXXXXXXXXXYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGI-DGPKEVAMKLAVRSEDDNVSDMI 607
            +QLL+ V V ++             P  SLPY  PG  +     P+  P      FS  ++++V++ DP T           Y LEDLEV   D++ KV   NF  AWE +G +FE+ + + L    +L EAV  +IS LGMQPCE ++ V  N  SH   L+GVF G   VLVR +  + DG   V M++ VRS ++ V D+I
Sbjct:  670 DQLLQKVLVQMEPSEAYEVIHYIPAP--SLPYSQPGSCYSLVRLPDDDPTAVSCTFSCTMKYLVRDCDPNTGEPDDDGYDDEYVLEDLEVTVPDHIQKVLKPNFGAAWEEVGDEFEKEETFALASVRTLDEAVGNIISFLGMQPCERSDKVPENKNSHVLFLAGVFRGGHDVLVRARLALADG---VTMQVTVRSSEETVVDVI 868          
BLAST of CV712205 vs. ExPASy Swiss-Prot
Match: COPG_MOUSE (Coatomer subunit gamma OS=Mus musculus GN=Copg PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.554e-27
Identity = 74/203 (36.45%), Postives = 107/203 (52.71%), Query Frame = 2
Query:    5 EQLLENVTVIVDXXXXXXXXXXXXKPLRSLPYDSPGQ--TFVAFEKPEGVPAVGKFSNMLRFIVKEVDPTTXXXXXXXXXXXYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMI 607
            +Q LENVTV ++             P RSLPY+ PG   T VA    +       FS +++F VK+ DP T           Y LEDLEV  AD++ KV   NF  AW+ +G +FE+ + + L   ++L EAV  ++  LGM PCE ++ V  N  +HT LL+GVF G   +LVR +  +     V M++  RS ++   D+I
Sbjct:  671 DQTLENVTVQMEPTEAYEVLSYV--PARSLPYNQPGTCYTLVALPTEDPTAVACTFSCVMKFTVKDCDPNTGEIDEEGYEDEYVLEDLEVTVADHIQKVMKVNFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPENKNTHTLLLAGVFRGGHDILVRSRLLL--LDTVTMQVTARSSEELPVDII 869          
BLAST of CV712205 vs. ExPASy Swiss-Prot
Match: COPG2_XENLA (Coatomer subunit gamma-2 OS=Xenopus laevis GN=copg2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.718e-26
Identity = 73/204 (35.78%), Postives = 108/204 (52.94%), Query Frame = 2
Query:    5 EQLLENVTVIVDXXXXXXXXXXXXKPLRSLPYDSPGQTFVAFEKPEGVPAVGK--FSNMLRFIVKEVDPTTXXXXXXXXXXXYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGI-DGPKEVAMKLAVRSEDDNVSDMI 607
            +QLLE VTV ++             P  SL Y+ PG  +     P+  P      FS  ++F+V++ DP T           Y LEDLE+  +D++ KV   NF  +WE +G  +E+ + + L   ++L EAV+ +I  LGMQPCE ++ V  N  SH   LSGVF G    LVR +  + DG   V M++ VRS+D+  +D+I
Sbjct:  669 DQLLEKVTVQMEPSEAYEVLHYVPAP--SLTYNQPGICYTLVSLPDDDPTAVSCTFSCTMKFVVRDCDPQTGVPDDEGYSDEYVLEDLELSLSDHIQKVLKPNFGASWEEVGDAYEKEETFALTTTKTLEEAVNNIIKFLGMQPCERSDKVPENKNSHVLYLSGVFRGGHDALVRSRLALADG---VTMQVTVRSQDETPADVI 867          
BLAST of CV712205 vs. ExPASy Swiss-Prot
Match: COPG_DICDI (Coatomer subunit gamma OS=Dictyostelium discoideum GN=copG PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.757e-23
Identity = 68/206 (33.01%), Postives = 102/206 (49.51%), Query Frame = 2
Query:    5 EQLLENVTVIVDXXXXXXXXXXXXKPLRSLPYDSPGQTFVAFEKPEGVPAVG----KFSNMLRFIVKEVDPTTXXXXXXXXXXXYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGID-GPKEVAMKLAVRSEDDNVSDMI 607
            EQ L NV+V +              P+  LPY  P Q +VA      +PA G     FSN L+F VKEVDP+T           Y LE LE+V  D++ +  V NF   W+ +  D + V  + L   +S+ EAV  +I  LGM P E +EVV   S  H   L+G  + N  + VR +  +D       ++L ++S+D++++D +
Sbjct:  689 EQQLSNVSVKMVPSDPKLLKYECSIPIDVLPYGEPQQCYVAIRY---IPANGYPLCSFSNALKFKVKEVDPSTGELDEPGYDDQYSLERLEIVPKDFLNRAFVGNFSEEWKKMSEDTQLVQTFSLVGVKSIDEAVKQIIKTLGMAPAEKSEVVTPKSAKHILYLTGKSLNNQLIYVRARMKLDQSQTNTDVELTIKSDDESLNDFV 891          
BLAST of CV712205 vs. ExPASy Swiss-Prot
Match: COPG_CAEEL (Probable coatomer subunit gamma OS=Caenorhabditis elegans GN=T14G10.5 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.035e-19
Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 2
Query:   92 LPYDSPGQTFVAFEKPEGVPAVGKFSNMLRFIVKEVDPTTXXXXXXXXXXX-YQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGID-GPKEVAMKLAVRSEDDNVSDMI 607
            LPY      F   E P+     G    +L+F V +VDPT+            Y LE+++V  +D V  V  S+F +AWE++G D  R + + L   E++ +AV  +  +LG+ PCE ++ V      HT  LSGVF G   VL +    +D     +AM + ++S +  V+D++
Sbjct:  692 LPYGEVHSAFSLLEFPDSGAISGSLGAILKFKVMDVDPTSGEPDSDDTYEQTYVLEEVDVNVSDSVQGVAKSSFGSAWEALGDDATREETFQLSTVENIPDAVKKISEILGLVPCERSDRVPEGKTQHTVFLSGVFRGGYDVLSKATVAVDPNDNSIAMNIIIKSNEPLVADLV 865          
BLAST of CV712205 vs. ExPASy Swiss-Prot
Match: COPG_SCHPO (Probable coatomer subunit gamma OS=Schizosaccharomyces pombe GN=sec21 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.196e-11
Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 2
Query:  107 PGQTFVAFEKPEGVP-AVGKFSNMLRFIVKEVDPTTXXXXXXXXXXXYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKV--LVRLQFGIDGPKEVAMKLAVRSEDDNVSDMI 607
            P   FV+F+  + VP  +   +N L+F  KE+D  T           Y+++DL+V A D++     SNF   ++S+  + E  + Y L   +S     S V  LL MQP EGTE    +   H   LSG  +   KV  LV++    DG + + +K+  R E D+  +++
Sbjct:  735 PVSIFVSFKFNDSVPYPLTTLTNTLQFTTKEIDIHTGEPEEEGYEDEYKIDDLDVSAGDFISPAYESNFDGLFDSL--EHEASEVYVLSLLDSFRSTCSRVAELLQMQPLEGTE-NPTDKPVHVMKLSGKLVNGEKVLALVKMAHSKDG-EGITIKVIARGESDSSVELV 900          
The following BLAST results are available for this feature:
BLAST of CV712205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
COPG2_MOUSE5.342e-2836.27Coatomer subunit gamma-2 OS=Mus musculus GN=Copg2 ... [more]
COPG2_TAKRU9.111e-2836.76Coatomer subunit gamma-2 OS=Takifugu rubripes GN=c... [more]
COPG_MOUSE1.554e-2736.45Coatomer subunit gamma OS=Mus musculus GN=Copg PE=... [more]
COPG2_XENLA1.718e-2635.78Coatomer subunit gamma-2 OS=Xenopus laevis GN=copg... [more]
COPG_DICDI6.757e-2333.01Coatomer subunit gamma OS=Dictyostelium discoideum... [more]
COPG_CAEEL2.035e-1931.61Probable coatomer subunit gamma OS=Caenorhabditis ... [more]
COPG_SCHPO1.196e-1130.59Probable coatomer subunit gamma OS=Schizosaccharom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001B02_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712205 ID=CV712205; Name=CV712205; organism=Citrus sinensis; type=EST; length=783bp
ACCAGAGCAACTACTGGAAAATGTCACTGTTATTGTGGATGCTTCTGAAG
CTGAGGAATTTGCTGAACTAGCGTCAAAACCTCTGAGATCTCTTCCTTAT
GATTCACCCGGACAGACCTTTGTGGCATTTGAAAAACCAGAAGGAGTCCC
AGCTGTTGGAAAATTTTCTAACATGTTGAGATTCATTGTTAAAGAGGTTG
ATCCAACAACTGGTGACGTAGAGGATGATGGTGTTGAAGATGAATATCAG
TTAGAGGACCTTGAGGTTGTTGCAGCTGATTACGTGATGAAAGTAGGGGT
CTCCAATTTCAGGAATGCATGGGAAAGCATAGGCCCAGACTTTGAGCGTG
TAGATGAATATGGCCTTGGCCCAAGGGAAAGTCTGGCTGAAGCTGTTAGT
GCTGTCATCAGCCTTCTTGGCATGCAGCCTTGTGAGGGCACGGAAGTTGT
TGCAAACAATTCAAGGTCACATACATGTCTACTGTCTGGTGTTTTCATTG
GCAACGTCAAGGTCCTAGTGCGTTTGCAGTTTGGAATTGATGGTCCAAAG
GAGGTTGCAATGAAACTGGCCGTTAGATCCGAGGATGATAATGTCAGCGA
CATGATTCACGAGATTGTAGCTAGCGGCTGAAACTGAAAGCAATCATCAT
TTTTCCTTTTACCTGTACTCTGGCCTTTTTTAGTTTTTTTTGAACGAGAT
TAGGCAGATGGCTGCAGTAAAGACGAGCTTGTAGAAAAAACTTTTGGATT
CCTGGATTGAGGGTTATTGGTGCTTTGGGAATT
back to top