CV712204

Overview
NameCV712204
Unique NameCV712204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG2_MOUSE (Coatomer subunit gamma-2 OS=Mus musculus GN=Copg2 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.016e-28
Identity = 75/204 (36.76%), Postives = 111/204 (54.41%), Query Frame = -2
Query:  234 EQLLENVTVIVDXXXXXXXXXXXSKPLRSLPYDSPGQTFVAFEKPEGVPAV--GKFSNMLRFIVKEVDPTTXXXXXXXXXXEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGI-DGPKEVAMKLAVRSEDDNVSDMI 836
            +QLLE VTV ++             P  SLPY+ PG  +     P+  P    G FS  ++F V++ DP T          EY LEDLEV  +D++ K+   NF  AWE +G  FE+ + + L   ++L EAV+ +I+ LGMQPCE ++ V  N  SH+  L+GV+ G   +LVR +  + DG   V M++ VRS++    D+I
Sbjct:  668 DQLLEKVTVQMEPSDSYEVLCCIPAP--SLPYNQPGICYTLVRLPDEDPTAVAGTFSCTMKFTVRDCDPNTGVPDEDGYDDEYVLEDLEVTVSDHIQKILKPNFAAAWEEVGDAFEKEETFALSSTKTLEEAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALADG---VTMQVTVRSKERTPVDVI 866          
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG2_TAKRU (Coatomer subunit gamma-2 OS=Takifugu rubripes GN=copg2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.026e-27
Identity = 76/204 (37.25%), Postives = 107/204 (52.45%), Query Frame = -2
Query:  234 EQLLENVTVIVDXXXXXXXXXXXSKPLRSLPYDSPGQTFVAFEKPEGVPAVGK--FSNMLRFIVKEVDPTTXXXXXXXXXXEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGI-DGPKEVAMKLAVRSEDDNVSDMI 836
            +QLL+ V V ++             P  SLPY  PG  +     P+  P      FS  ++++V++ DP T          EY LEDLEV   D++ KV   NF  AWE +G +FE+ + + L    +L EAV  +IS LGMQPCE ++ V  N  SH   L+GVF G   VLVR +  + DG   V M++ VRS ++ V D+I
Sbjct:  670 DQLLQKVLVQMEPSEAYEVIHYIPAP--SLPYSQPGSCYSLVRLPDDDPTAVSCTFSCTMKYLVRDCDPNTGEPDDDGYDDEYVLEDLEVTVPDHIQKVLKPNFGAAWEEVGDEFEKEETFALASVRTLDEAVGNIISFLGMQPCERSDKVPENKNSHVLFLAGVFRGGHDVLVRARLALADG---VTMQVTVRSSEETVVDVI 868          
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG_MOUSE (Coatomer subunit gamma OS=Mus musculus GN=Copg PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.750e-27
Identity = 75/203 (36.95%), Postives = 108/203 (53.20%), Query Frame = -2
Query:  234 EQLLENVTVIVDXXXXXXXXXXXSKPLRSLPYDSPGQ--TFVAFEKPEGVPAVGKFSNMLRFIVKEVDPTTXXXXXXXXXXEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMI 836
            +Q LENVTV ++             P RSLPY+ PG   T VA    +       FS +++F VK+ DP T          EY LEDLEV  AD++ KV   NF  AW+ +G +FE+ + + L   ++L EAV  ++  LGM PCE ++ V  N  +HT LL+GVF G   +LVR +  +     V M++  RS ++   D+I
Sbjct:  671 DQTLENVTVQMEPTEAYEVLSYV--PARSLPYNQPGTCYTLVALPTEDPTAVACTFSCVMKFTVKDCDPNTGEIDEEGYEDEYVLEDLEVTVADHIQKVMKVNFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPENKNTHTLLLAGVFRGGHDILVRSRLLL--LDTVTMQVTARSSEELPVDII 869          
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG2_XENLA (Coatomer subunit gamma-2 OS=Xenopus laevis GN=copg2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.935e-26
Identity = 74/204 (36.27%), Postives = 109/204 (53.43%), Query Frame = -2
Query:  234 EQLLENVTVIVDXXXXXXXXXXXSKPLRSLPYDSPGQTFVAFEKPEGVPAVGK--FSNMLRFIVKEVDPTTXXXXXXXXXXEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGI-DGPKEVAMKLAVRSEDDNVSDMI 836
            +QLLE VTV ++             P  SL Y+ PG  +     P+  P      FS  ++F+V++ DP T          EY LEDLE+  +D++ KV   NF  +WE +G  +E+ + + L   ++L EAV+ +I  LGMQPCE ++ V  N  SH   LSGVF G    LVR +  + DG   V M++ VRS+D+  +D+I
Sbjct:  669 DQLLEKVTVQMEPSEAYEVLHYVPAP--SLTYNQPGICYTLVSLPDDDPTAVSCTFSCTMKFVVRDCDPQTGVPDDEGYSDEYVLEDLELSLSDHIQKVLKPNFGASWEEVGDAYEKEETFALTTTKTLEEAVNNIIKFLGMQPCERSDKVPENKNSHVLYLSGVFRGGHDALVRSRLALADG---VTMQVTVRSQDETPADVI 867          
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG_DICDI (Coatomer subunit gamma OS=Dictyostelium discoideum GN=copG PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.610e-23
Identity = 69/206 (33.50%), Postives = 104/206 (50.49%), Query Frame = -2
Query:  234 EQLLENVTVIVDXXXXXXXXXXXSKPLRSLPYDSPGQTFVAFEKPEGVPAVG----KFSNMLRFIVKEVDPTTXXXXXXXXXXEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGID-GPKEVAMKLAVRSEDDNVSDMI 836
            EQ L NV+V +            S P+  LPY  P Q +VA      +PA G     FSN L+F VKEVDP+T          +Y LE LE+V  D++ +  V NF   W+ +  D + V  + L   +S+ EAV  +I  LGM P E +EVV   S  H   L+G  + N  + VR +  +D       ++L ++S+D++++D +
Sbjct:  689 EQQLSNVSVKMVPSDPKLLKYECSIPIDVLPYGEPQQCYVAIRY---IPANGYPLCSFSNALKFKVKEVDPSTGELDEPGYDDQYSLERLEIVPKDFLNRAFVGNFSEEWKKMSEDTQLVQTFSLVGVKSIDEAVKQIIKTLGMAPAEKSEVVTPKSAKHILYLTGKSLNNQLIYVRARMKLDQSQTNTDVELTIKSDDESLNDFV 891          
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG_CAEEL (Probable coatomer subunit gamma OS=Caenorhabditis elegans GN=T14G10.5 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.291e-19
Identity = 55/174 (31.61%), Postives = 89/174 (51.15%), Query Frame = -2
Query:  234 LPYDSPGQTFVAFEKPEGVPAVGKFSNMLRFIVKEVDPTTXXXXXXXXXXE-YQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGID-GPKEVAMKLAVRSEDDNVSDMI 749
            LPY      F   E P+     G    +L+F V +VDPT+          + Y LE+++V  +D V  V  S+F +AWE++G D  R + + L   E++ +AV  +  +LG+ PCE ++ V      HT  LSGVF G   VL +    +D     +AM + ++S +  V+D++
Sbjct:  692 LPYGEVHSAFSLLEFPDSGAISGSLGAILKFKVMDVDPTSGEPDSDDTYEQTYVLEEVDVNVSDSVQGVAKSSFGSAWEALGDDATREETFQLSTVENIPDAVKKISEILGLVPCERSDRVPEGKTQHTVFLSGVFRGGYDVLSKATVAVDPNDNSIAMNIIIKSNEPLVADLV 865          
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG_SCHPO (Probable coatomer subunit gamma OS=Schizosaccharomyces pombe GN=sec21 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.346e-11
Identity = 53/170 (31.18%), Postives = 84/170 (49.41%), Query Frame = -2
Query:  234 PGQTFVAFEKPEGVP-AVGKFSNMLRFIVKEVDPTTXXXXXXXXXXEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKV--LVRLQFGIDGPKEVAMKLAVRSEDDNVSDMI 734
            P   FV+F+  + VP  +   +N L+F  KE+D  T          EY+++DL+V A D++     SNF   ++S+  + E  + Y L   +S     S V  LL MQP EGTE    +   H   LSG  +   KV  LV++    DG + + +K+  R E D+  +++
Sbjct:  735 PVSIFVSFKFNDSVPYPLTTLTNTLQFTTKEIDIHTGEPEEEGYEDEYKIDDLDVSAGDFISPAYESNFDGLFDSL--EHEASEVYVLSLLDSFRSTCSRVAELLQMQPLEGTE-NPTDKPVHVMKLSGKLVNGEKVLALVKMAHSKDG-EGITIKVIARGESDSSVELV 900          
The following BLAST results are available for this feature:
BLAST of CV712204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
COPG2_MOUSE6.016e-2836.76Coatomer subunit gamma-2 OS=Mus musculus GN=Copg2 ... [more]
COPG2_TAKRU1.026e-2737.25Coatomer subunit gamma-2 OS=Takifugu rubripes GN=c... [more]
COPG_MOUSE1.750e-2736.95Coatomer subunit gamma OS=Mus musculus GN=Copg PE=... [more]
COPG2_XENLA1.935e-2636.27Coatomer subunit gamma-2 OS=Xenopus laevis GN=copg... [more]
COPG_DICDI7.610e-2333.50Coatomer subunit gamma OS=Dictyostelium discoideum... [more]
COPG_CAEEL2.291e-1931.61Probable coatomer subunit gamma OS=Caenorhabditis ... [more]
COPG_SCHPO1.346e-1131.18Probable coatomer subunit gamma OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712204 ID=CV712204; Name=CV712204; organism=Citrus sinensis; type=EST; length=843bp
GCCCCCCCTTTTAGAGATTATACAAAGAATATTATTATGCATTCGACGGA
CCCAAATAATTCCCAAAGCACCAATAACCCTCAATCCAGGAATCCAAAAG
TTTTTTCTACAAGCTCGTCTTTACTGCAGCCATCTGCCTAATCTCGTTCA
AAAAAAACTAAAAAAGGCCAGAGTACAGGTAAAAGGAAAAATGATGATTG
CTTTCAGTTTCAGCCGCTAGCTACAATCTCGTGAATCATGTCGCTGACAT
TATCATCCTCGGATCTAACGGCCAGTTTCATTGCAACCTCCTTTGGACCA
TCAATTCCAAACTGCAAACGCACTAGGACCTTGACGTTGCCAATGAAAAC
ACCAGACAGTAGACATGTATGTGACCTTGAATTGTTTGCAACAACTTCCG
TGCCCTCACAAGGCTGCATGCCAAGAAGGCTGATGACAGCACTAACAGCT
TCAGCCAGACTTTCCCTTGGGCCAAGGCCATATTCATCTACACGCTCAAA
GTCTGGGCCTATGCTTTCCCATGCATTCCTGAAATTGGAGACCCCTACTT
TCATCACGTAATCAGCTGCAACAACCTCAAGGTCCTCTAACTGATATTCA
TCTTCAACACCATCATCCTCTACGTCACCAGTTGTTGGATCAACCTCTTT
AACAATGAATCTCAACATGTTAGAAAATTTTCCAACAGCTGGGACTCCTT
CTGGTTTTTCAAATGCCACAAAGGTCTGTCCGGGTGAATCATAAGGAAGA
GATCTCAGAGGTTTTGACGCTAGTTCAGCAAATTCCTCAGCTTCAGAAGC
ATCCACAATAACAGTGACATTTTCCAGTAGTTGCTCTGGTCCT
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