CV712201

Overview
NameCV712201
Unique NameCV712201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.753e-24
Identity = 48/102 (47.06%), Postives = 73/102 (71.57%), Query Frame = -2
Query:  340 ENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFL 645
            ++DLPG+D+FV TAD + E P++  NT+LS+++ DYP EKLSVY+SDD     TF A+ EA+ FAK W+P+C+K  +EPR+P +YF    +P++ +    F+
Sbjct:  200 KSDLPGIDVFVSTADAEKEPPLVTANTILSILSVDYPVEKLSVYISDDGGSLVTFEAIAEAASFAKIWVPFCRKHKIEPRNPESYFGLKRDPYKDKVRHDFV 301          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.950e-23
Identity = 47/102 (46.08%), Postives = 72/102 (70.59%), Query Frame = -2
Query:  340 ENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFL 645
            ++DLPG+D+FV TADP+ E P++  NT+LS++A DYP EKL+ Y+SDD     TF A+ EA+ FA  W+P+C+K  +EPR+P +YF    +P++ +    F+
Sbjct:  372 KSDLPGLDMFVSTADPEKEPPLVTSNTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFSLKRDPYKNKVKADFV 473          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.950e-23
Identity = 47/102 (46.08%), Postives = 71/102 (69.61%), Query Frame = -2
Query:  340 ENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFL 645
            ++DLPG D+FV TADP+ E P++  NT+LS++A +YP EKLS Y+SDD     TF A+ EA+ FA  W+P+C+K  +EPR+P +YF    +P++ +    F+
Sbjct:  375 KSDLPGFDVFVSTADPEKEPPLVTANTILSILAAEYPVEKLSCYVSDDGGALLTFEAMAEAASFANIWVPFCRKHAIEPRNPDSYFSLKRDPYKNKVKSDFV 476          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.410e-23
Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = -2
Query:  388 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 642
            +DLPG+D+FV TADP+ E P++  NT+LS++A DYP EKL+ YLSDD     TF AL + + FA  W+P+C+K  +EPR+P AYF
Sbjct:  397 SDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAQTASFASTWVPFCRKHNIEPRNPEAYF 481          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.677e-23
Identity = 48/109 (44.04%), Postives = 74/109 (67.89%), Query Frame = -2
Query:  316 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFLAIKVQISQ 642
            +DLPG+D+FV TADP+ E P++  NT+LS++A DYP EK+S YLSDD     +F A+ EA+ FA  W+P+C+K  +EPR+P +YF    +P + +    F+  + +I +
Sbjct:  351 SDLPGIDLFVSTADPEKEPPLVTANTILSILAVDYPVEKVSCYLSDDGGALLSFEAMAEAASFADLWVPFCRKHNIEPRNPDSYFSLKIDPTKNKSRIDFVKDRRKIKR 459          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.677e-22
Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = -2
Query:  388 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 642
            +DLPG+D+FV +ADP+ E P++  NT+LS++A DYP EKL+ YLSDD     +F AL E + FA+ W+P+C+K  VEPR P AYF
Sbjct:  406 SDLPGIDVFVTSADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLSFEALAETASFARTWVPFCRKHGVEPRCPEAYF 490          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.677e-22
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = -2
Query:  340 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFL 642
            +DLPG+D+FV TADP+ E  +    T+LS++A DYP EKL+ Y+SDD     TF A+ EA+ FA  W+P+CKK  +EPR+P +YF    +P + +    F+
Sbjct:  376 SDLPGLDVFVSTADPEKEPVLTTATTILSILAVDYPVEKLACYVSDDGGALLTFEAMAEAASFANVWVPFCKKHDIEPRNPDSYFSVKGDPTKGKRRNDFV 476          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.803e-22
Identity = 45/101 (44.55%), Postives = 69/101 (68.32%), Query Frame = -2
Query:  340 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFL 642
            +DLPG+D+F+ TADP  E  ++  NT+LS++A +YP EKL VY+SDD     TF ++ EA  FAK W+P+C+K  +EPR+P +YF    +P + ++   F+
Sbjct:  234 SDLPGLDVFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVWVPFCRKHSIEPRNPDSYFTQKGDPTKGKKRPDFV 334          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.803e-22
Identity = 45/101 (44.55%), Postives = 69/101 (68.32%), Query Frame = -2
Query:  340 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFL 642
            +DLPG+D+F+ TADP  E  ++  NT+LS++A +YP EKL VY+SDD     TF ++ EA  FAK W+P+C+K  +EPR+P +YF    +P + ++   F+
Sbjct:  234 SDLPGLDVFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVWVPFCRKHSIEPRNPDSYFTQKGDPTKGKKRPDFV 334          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.273e-22
Identity = 47/96 (48.96%), Postives = 69/96 (71.88%), Query Frame = -2
Query:  355 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEE 642
            ++LP +D+FV TADP  E P++V+NTVLS++A +YP  KL+ Y+SDD     T+++L EAS+FAK W+P+CKK+ V  R+P  YF++  E  E  E
Sbjct:   90 HELPPVDMFVTTADPVREPPLIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVRAPFMYFRNSPEAAEGSE 185          
The following BLAST results are available for this feature:
BLAST of CV712201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLD6_ARATH8.753e-2447.06Putative cellulose synthase-like protein D6 OS=Ara... [more]
CSLD3_ARATH1.950e-2346.08Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]
CSLD2_ARATH1.950e-2346.08Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]
CSLD5_ARATH7.410e-2354.12Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLD4_ARATH9.677e-2344.04Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLD4_ORYSJ3.677e-2254.12Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLD3_ORYSJ3.677e-2245.54Cellulose synthase-like protein D3 OS=Oryza sativa... [more]
CSLD5_ORYSJ4.803e-2244.55Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI4.803e-2244.55Putative cellulose synthase-like protein D5 OS=Ory... [more]
CSLB4_ARATH6.273e-2248.96Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A24_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712201 ID=CV712201; Name=CV712201; organism=Citrus sinensis; type=EST; length=823bp
CTTCAATTCAGCAAAGCATGATAAGATAACAGCTTTTGTTTCTTTAAATA
TTAATAGGACATACTTGAAGAATGGTGTCGTGGTCACGTTGGGAAAAAAA
TGAATCCCACTGCGAAAATCCTTTATATTTTGACCTTACTTCTTCAGGTA
TTCGGCTTAGCTTGGCTGCGGTTATGATTCCATTTTCCATATCTTCATAT
AATTTCTAGACAGAGAAAAAAAATTGCATGAAGGCTATGTACTACATCTA
AAAGAACCGAAAGCAGTCAAAAGAAGTAACCAGTTCCCATTCCTTGATTC
ATGCTATACTATATTTTGACTTATTTGTACCTTGATGGCTAAAAACCCTT
TAGCCTCCTCTGCCTCATGTGGTTCAGAAATTGACTGAAAATAAGCACCT
GGTGACCTAGGCTCCACATAAAATTTCTTGCAATAGGGGATCCAATGCTT
TGCAAATTGAGATGCCTCTATGAGAGCATAAAATGTACTATCGTGAGCAG
CATCGTCTGAGAGATATACACTAAGCTTCTCTGTAGGATAATCATATGCC
ATGACCGATAAAACAGTGTTGATCACCATGATTGGTTGCTCTGTCTTGGG
GTCTGCTGTGCATACAAAAATATCCATCCCGGGCAAGTCATTCTCATATC
TGCAAATGAAAAAAAATATATATATTTGCTTCCTTGCCATGATAATCAAG
TTTTAAATCTTTTCCATTAACTTGNTAATAAGAATGCACAAATATGTATA
TTTCTGTTGTATGTTTGAGTCTTTAGAAATACAGCTCATCTGTGTCCTTC
TAGCTTTTCTATTTCATTATTAA
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