CV712201

Overview
NameCV712201
Unique NameCV712201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.192e-22
Identity = 45/92 (48.91%), Postives = 66/92 (71.74%), Query Frame = -2
Query:  370 ENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEP 645
            ++DLPG+DIFV TADP+ E  ++  NT+LS++A DYP +KL+ Y+SDD     TF A+ EA+ FA  W+P+C+K  +EPR+P +YF    +P
Sbjct:  345 KSDLPGIDIFVSTADPEKEPVLVTANTILSILAADYPVDKLACYVSDDGGALLTFEAMAEAASFANLWVPFCRKHEIEPRNPDSYFNLKRDP 436          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.192e-22
Identity = 45/92 (48.91%), Postives = 66/92 (71.74%), Query Frame = -2
Query:  370 ENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEP 645
            ++DLPG+DIFV TADP+ E  ++  NT+LS++A DYP +KL+ Y+SDD     TF A+ EA+ FA  W+P+C+K  +EPR+P +YF    +P
Sbjct:  345 KSDLPGIDIFVSTADPEKEPVLVTANTILSILAADYPVDKLACYVSDDGGALLTFEAMAEAASFANLWVPFCRKHEIEPRNPDSYFNLKRDP 436          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.192e-22
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = -2
Query:  385 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQ 642
            + L  +D FV T DP  E P++  NTVLS+++ DYP EK+S Y+SDD A   TF AL E S+FAK W+P+CKKF +EPR+P  YFQ
Sbjct:  353 SQLAPVDFFVSTVDPSKEPPLVTANTVLSILSVDYPVEKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKFNIEPRAPEWYFQ 438          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.070e-21
Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = -2
Query:  343 DLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGF 639
            DLP +D+FV TADP  E PIMV+NTVLS++A +YP  KL+ Y+SDD     T+++L EAS+FAK W+P+CKK+ ++ R+P  YF +   P  A E   F
Sbjct:   91 DLPSVDMFVPTADPVREPPIMVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNLKVRAPFRYFLN---PFAATEGSEF 186          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.070e-21
Identity = 49/103 (47.57%), Postives = 68/103 (66.02%), Query Frame = -2
Query:  388 KQIYIFFFICRYE-----NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+     RYE     N L  +D+FV T DP  E P++  NTVLS++A DYP EK+S Y+SDD A   TF +L E ++FA+ W+P+CKKF +EPR+P  YF
Sbjct:  294 RETYLDRLSLRYEREGEPNMLAPVDVFVSTVDPLKEPPLVTSNTVLSILAMDYPVEKISCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEMYF 396          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.384e-21
Identity = 46/103 (44.66%), Postives = 70/103 (67.96%), Query Frame = -2
Query:  388 KQIYIFFFICRYE-----NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+     RYE     ++L G+D+FV T DP  E P++  NTVLS++A DYP ++++ Y+SDD A   TF AL E ++FA+ W+P+CKK+ +EPR+P  YF
Sbjct:  320 RETYLDRLSLRYEKEGKPSELAGVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDRVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYTIEPRAPEWYF 422          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.113e-21
Identity = 47/103 (45.63%), Postives = 68/103 (66.02%), Query Frame = -2
Query:  388 KQIYIFFFICRYEND-----LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+     RYE +     L  +D+FV T DP  E P++  NTVLS++A DYP +K+S Y+SDD A   TF +L E ++FA+ W+P+CKKF +EPR+P  YF
Sbjct:  323 RETYLDRLSLRYEREGEPSLLSAVDLFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEFYF 425          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.113e-21
Identity = 47/103 (45.63%), Postives = 68/103 (66.02%), Query Frame = -2
Query:  388 KQIYIFFFICRYEND-----LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+     RYE +     L  +D+FV T DP  E P++  NTVLS++A DYP +K+S Y+SDD A   TF +L E ++FA+ W+P+CKKF +EPR+P  YF
Sbjct:  323 RETYLDRLSLRYEREGEPSLLSAVDLFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEFYF 425          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.113e-21
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = -2
Query:  385 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQ 642
            + L  +D FV T DP  E P++  NTVLS++A DYP +K+S Y+SDD A   TF AL E S+FAK W+P+CKK+ +EPR+P  YFQ
Sbjct:  353 SQLAPIDFFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKYSIEPRAPEWYFQ 438          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.113e-21
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = -2
Query:  388 KQIYIFFFICRYEND-----LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+     RY+ +     L  +DIFV T DP  E P++  NTVLS++A DYP +K+S Y+SDD A   TF AL E S+FA+ W+P+CKK+ +EPR+P  YF
Sbjct:  325 RETYLDRLALRYDREGEPSQLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRAPEWYF 427          
The following BLAST results are available for this feature:
BLAST of CV712201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLD1_ORYSJ8.192e-2248.91Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI8.192e-2248.91Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CESA6_ORYSJ8.192e-2254.65Probable cellulose synthase A catalytic subunit 6 ... [more]
CSLB2_ARATH1.070e-2150.51Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]
CESA7_ARATH1.070e-2147.57Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA5_ARATH2.384e-2144.66Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CESA9_ORYSJ3.113e-2145.63Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA9_ORYSI3.113e-2145.63Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA3_ORYSJ3.113e-2153.49Probable cellulose synthase A catalytic subunit 3 ... [more]
CESA2_ORYSJ3.113e-2146.60Probable cellulose synthase A catalytic subunit 2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A24_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712201 ID=CV712201; Name=CV712201; organism=Citrus sinensis; type=EST; length=823bp
CTTCAATTCAGCAAAGCATGATAAGATAACAGCTTTTGTTTCTTTAAATA
TTAATAGGACATACTTGAAGAATGGTGTCGTGGTCACGTTGGGAAAAAAA
TGAATCCCACTGCGAAAATCCTTTATATTTTGACCTTACTTCTTCAGGTA
TTCGGCTTAGCTTGGCTGCGGTTATGATTCCATTTTCCATATCTTCATAT
AATTTCTAGACAGAGAAAAAAAATTGCATGAAGGCTATGTACTACATCTA
AAAGAACCGAAAGCAGTCAAAAGAAGTAACCAGTTCCCATTCCTTGATTC
ATGCTATACTATATTTTGACTTATTTGTACCTTGATGGCTAAAAACCCTT
TAGCCTCCTCTGCCTCATGTGGTTCAGAAATTGACTGAAAATAAGCACCT
GGTGACCTAGGCTCCACATAAAATTTCTTGCAATAGGGGATCCAATGCTT
TGCAAATTGAGATGCCTCTATGAGAGCATAAAATGTACTATCGTGAGCAG
CATCGTCTGAGAGATATACACTAAGCTTCTCTGTAGGATAATCATATGCC
ATGACCGATAAAACAGTGTTGATCACCATGATTGGTTGCTCTGTCTTGGG
GTCTGCTGTGCATACAAAAATATCCATCCCGGGCAAGTCATTCTCATATC
TGCAAATGAAAAAAAATATATATATTTGCTTCCTTGCCATGATAATCAAG
TTTTAAATCTTTTCCATTAACTTGNTAATAAGAATGCACAAATATGTATA
TTTCTGTTGTATGTTTGAGTCTTTAGAAATACAGCTCATCTGTGTCCTTC
TAGCTTTTCTATTTCATTATTAA
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