CV712201

Overview
NameCV712201
Unique NameCV712201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.113e-21
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = -2
Query:  388 KQIYIFFFICRYEND-----LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+     RY+ +     L  +DIFV T DP  E P++  NTVLS++A DYP +K+S Y+SDD A   TF AL E S+FA+ W+P+CKK+ +EPR+P  YF
Sbjct:  325 RETYLDRLALRYDREGEPSQLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRAPEWYF 427          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.066e-21
Identity = 46/96 (47.92%), Postives = 68/96 (70.83%), Query Frame = -2
Query:  355 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEE 642
            +DLP +D+FV TADP  E PI+V NT+LS++A +YP  KL+ Y+SDD     T+++L EAS+FAK W+P+CKK+ ++ R+P  YF +     E+ E
Sbjct:   90 HDLPSVDMFVTTADPVREPPILVANTLLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNIKVRAPFRYFLNPPAATESSE 185          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.066e-21
Identity = 45/85 (52.94%), Postives = 63/85 (74.12%), Query Frame = -2
Query:  388 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 642
            +DLP +D+FV TADP  E PIMV++TVLS++A +YP  KL+ Y+SDD     T+++L EAS+FAK W+P+CKK+    R+P  YF
Sbjct:   90 HDLPSVDMFVPTADPVREPPIMVVDTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNTRVRAPSRYF 174          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.066e-21
Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = -2
Query:  388 KQIYIFFFICRY----ENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+   I RY    ++ L  +D FV T DP  E P++  NTVLS++A DYP EK+S Y+SDD +   TF +L E ++FA+ W+P+CKK+ +EPR+P  YF
Sbjct:  245 RETYVDRLIARYGDGEDSGLAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYF 346          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.066e-21
Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = -2
Query:  388 KQIYIFFFICRY----ENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+   I RY    ++ L  +D FV T DP  E P++  NTVLS++A DYP EK+S Y+SDD +   TF +L E ++FA+ W+P+CKK+ +EPR+P  YF
Sbjct:  245 RETYVDRLIARYGDGEDSGLAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYF 346          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.310e-21
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = -2
Query:  385 ENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQ 645
            ++ L  +D FV T DP  E P++  NTVLS++A DYP +K+S Y+SDD A   TF AL E S+FAK W+P+CK++ +EPR+P  YFQ
Sbjct:  351 QSQLAPVDFFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKRYSLEPRAPEWYFQ 437          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.310e-21
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = -2
Query:  385 ENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQ 645
            ++ L  +D FV T DP  E P++  NTVLS++A DYP +K+S Y+SDD A   TF AL E S+FAK W+P+CK++ +EPR+P  YFQ
Sbjct:  351 QSQLAPVDFFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKRYSLEPRAPEWYFQ 437          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.183e-20
Identity = 46/103 (44.66%), Postives = 68/103 (66.02%), Query Frame = -2
Query:  388 KQIYIFFFICRYEND-----LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+     RY+ +     L  +DIFV T DP  E P++  NTVLS++A DYP +K+S Y+SDD A   +F +L E S+FA+ W+P+CKK+ +EPR+P  YF
Sbjct:  315 RETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYSIEPRAPEWYF 417          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.545e-20
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = -2
Query:  388 RYEND-----LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 651
            RY+ D     L  +D+FV T DP  E P++  NTVLS++A DYP +K++ Y+SDD +   TF AL E ++F+K W+P+CKKF +EPR+P  YF
Sbjct:  328 RYDRDGEPSQLAPVDVFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVACYVSDDGSAMLTFEALSETAEFSKKWVPFCKKFNIEPRAPEFYF 420          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.545e-20
Identity = 47/103 (45.63%), Postives = 68/103 (66.02%), Query Frame = -2
Query:  388 KQIYIFFFICRYE-----NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+     RYE     ++L  +D+FV T DP  E P++  NTVLS++A DYP EK++ Y+SDD A   TF AL   ++FA+ W+P+CKKF +EPR+P  YF
Sbjct:  338 RETYLDRLSLRYEKEGKPSELAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSYTAEFARKWVPFCKKFSIEPRAPEWYF 440          
The following BLAST results are available for this feature:
BLAST of CV712201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CESA2_ORYSI3.113e-2146.60Probable cellulose synthase A catalytic subunit 2 ... [more]
CSLB3_ARATH4.066e-2147.92Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CSLB1_ARATH4.066e-2152.94Cellulose synthase-like protein B1 OS=Arabidopsis ... [more]
CESA4_ORYSJ4.066e-2145.10Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSI4.066e-2145.10Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA5_ORYSJ5.310e-2151.72Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI5.310e-2151.72Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA3_ARATH1.183e-2044.66Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESAA_ARATH1.545e-2048.39Probable cellulose synthase A catalytic subunit 10... [more]
CESA9_ARATH1.545e-2045.63Probable cellulose synthase A catalytic subunit 9 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A24_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712201 ID=CV712201; Name=CV712201; organism=Citrus sinensis; type=EST; length=823bp
CTTCAATTCAGCAAAGCATGATAAGATAACAGCTTTTGTTTCTTTAAATA
TTAATAGGACATACTTGAAGAATGGTGTCGTGGTCACGTTGGGAAAAAAA
TGAATCCCACTGCGAAAATCCTTTATATTTTGACCTTACTTCTTCAGGTA
TTCGGCTTAGCTTGGCTGCGGTTATGATTCCATTTTCCATATCTTCATAT
AATTTCTAGACAGAGAAAAAAAATTGCATGAAGGCTATGTACTACATCTA
AAAGAACCGAAAGCAGTCAAAAGAAGTAACCAGTTCCCATTCCTTGATTC
ATGCTATACTATATTTTGACTTATTTGTACCTTGATGGCTAAAAACCCTT
TAGCCTCCTCTGCCTCATGTGGTTCAGAAATTGACTGAAAATAAGCACCT
GGTGACCTAGGCTCCACATAAAATTTCTTGCAATAGGGGATCCAATGCTT
TGCAAATTGAGATGCCTCTATGAGAGCATAAAATGTACTATCGTGAGCAG
CATCGTCTGAGAGATATACACTAAGCTTCTCTGTAGGATAATCATATGCC
ATGACCGATAAAACAGTGTTGATCACCATGATTGGTTGCTCTGTCTTGGG
GTCTGCTGTGCATACAAAAATATCCATCCCGGGCAAGTCATTCTCATATC
TGCAAATGAAAAAAAATATATATATTTGCTTCCTTGCCATGATAATCAAG
TTTTAAATCTTTTCCATTAACTTGNTAATAAGAATGCACAAATATGTATA
TTTCTGTTGTATGTTTGAGTCTTTAGAAATACAGCTCATCTGTGTCCTTC
TAGCTTTTCTATTTCATTATTAA
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