CV712201

Overview
NameCV712201
Unique NameCV712201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.545e-20
Identity = 46/103 (44.66%), Postives = 68/103 (66.02%), Query Frame = -2
Query:  388 KQIYIFFFICRYEND-----LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+     RYE +     L  +D+FV T DP  E P++  NTVLS++A DYP +K++ Y+SDD A   TF AL E ++FA+ W+P+CKK+ +EPR+P  YF
Sbjct:  332 RETYLDRLSLRYEKEGKPSGLSPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYCIEPRAPEWYF 434          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.545e-20
Identity = 46/103 (44.66%), Postives = 68/103 (66.02%), Query Frame = -2
Query:  388 KQIYIFFFICRYEND-----LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+     RYE +     L  +D+FV T DP  E P++  NTVLS++A DYP +K++ Y+SDD A   TF AL + ++FA+ W+P+CKKF +EPR+P  YF
Sbjct:  333 RETYLDRLSLRYEKEGKPSGLAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSDTAEFARKWVPFCKKFNIEPRAPEWYF 435          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.018e-20
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = -2
Query:  388 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 642
            +DLP +D+FV TADP  E PI+V+NTVLS++A +YP  KL+ Y+SDD     T+++L EAS+F K W P+CKK+ V  R+P  YF
Sbjct:   90 HDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYF 174          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.018e-20
Identity = 47/103 (45.63%), Postives = 65/103 (63.11%), Query Frame = -2
Query:  388 KQIYIFFFICRYEND-----LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+     RYE D     L  +D FV T DP  E PI+  NTVLS++A DYP +++S Y+SDD A    F  L E ++FA+ W+P+CKKF +EPR+P  YF
Sbjct:  269 RETYLDRLALRYERDGEPCRLAPIDFFVSTVDPLKEPPIITANTVLSILAVDYPVDRVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKFTIEPRAPEFYF 371          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.018e-20
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = -2
Query:  388 KQIYIFFFICRYEND-----LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+     RY+ D     L  +D+FV T DP  E P++  NTVLS+++ DYP +K++ Y+SDD +   TF +L E ++FAK W+P+CKKF +EPR+P  YF
Sbjct:  331 RETYLDRLAIRYDRDGEPSQLVPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVACYVSDDGSAMLTFESLSETAEFAKKWVPFCKKFNIEPRAPEFYF 433          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.635e-20
Identity = 47/103 (45.63%), Postives = 67/103 (65.05%), Query Frame = -2
Query:  388 KQIYIFFFICRYEND-----LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+     RY+ +     L  +DIFV T DP  E P++  NTVLS++A DYP +K+S Y+SDD A   TF AL E S+FA+ W+P+ KK+ +EPR+P  YF
Sbjct:  332 RETYLDRLALRYDREGEPSQLAAVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFVKKYNIEPRAPEWYF 434          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.635e-20
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = -2
Query:  388 KQIYIFFFICRYEND-----LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ YI     R+E +     L  +D FV T DP  E P++  NTVLS++A DYP +K+S Y+SDD A   +F +L+E + FA+ W+P+CKK+ +EPR+P  YF
Sbjct:  240 RETYIDRLSARFEREGEQSQLAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLSFESLVETADFARKWVPFCKKYSIEPRAPEFYF 342          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.635e-20
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = -2
Query:  388 ENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 645
            +N L  +D+FV T DP  E PI+  NT+LS++A DYP  K+S Y+SDD A    F  L E S+FA+ W+P+CKK+ VEPR+P  YF
Sbjct:  288 KNKLAPVDVFVSTVDPLKEPPIITANTILSILAVDYPVNKVSCYVSDDGASMLLFDTLSETSEFARRWVPFCKKYNVEPRAPEFYF 373          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.871e-20
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = -2
Query:  388 KQIYIFFFICRYEND-----LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+     RY+ +     L  +D+FV T DP  E P++  NTVLS++A DYP +K+S Y+SDD +   TF AL E ++FA+ W+P+CKK  +EPR+P  YF
Sbjct:  328 RETYLDRLALRYDREGEPSQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYF 430          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.871e-20
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = -2
Query:  388 KQIYIFFFICRYEND-----LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 681
            ++ Y+     RY+ +     L  +D+FV T DP  E P++  NTVLS++A DYP +K+S Y+SDD +   TF AL E ++FA+ W+P+CKK  +EPR+P  YF
Sbjct:  328 RETYLDRLALRYDREGEPSQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYF 430          
The following BLAST results are available for this feature:
BLAST of CV712201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CESA6_ARATH1.545e-2044.66Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CESA2_ARATH1.545e-2044.66Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CSLB6_ARATH2.018e-2052.94Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]
CESA7_ORYSJ2.018e-2045.63Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA1_ARATH2.018e-2043.69Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESA8_ORYSJ2.635e-2045.63Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA8_ARATH2.635e-2043.69Cellulose synthase A catalytic subunit 8 [UDP-form... [more]
CESA4_ARATH2.635e-2051.16Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA1_ORYSJ5.871e-2043.69Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI5.871e-2043.69Probable cellulose synthase A catalytic subunit 1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001A24_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712201 ID=CV712201; Name=CV712201; organism=Citrus sinensis; type=EST; length=823bp
CTTCAATTCAGCAAAGCATGATAAGATAACAGCTTTTGTTTCTTTAAATA
TTAATAGGACATACTTGAAGAATGGTGTCGTGGTCACGTTGGGAAAAAAA
TGAATCCCACTGCGAAAATCCTTTATATTTTGACCTTACTTCTTCAGGTA
TTCGGCTTAGCTTGGCTGCGGTTATGATTCCATTTTCCATATCTTCATAT
AATTTCTAGACAGAGAAAAAAAATTGCATGAAGGCTATGTACTACATCTA
AAAGAACCGAAAGCAGTCAAAAGAAGTAACCAGTTCCCATTCCTTGATTC
ATGCTATACTATATTTTGACTTATTTGTACCTTGATGGCTAAAAACCCTT
TAGCCTCCTCTGCCTCATGTGGTTCAGAAATTGACTGAAAATAAGCACCT
GGTGACCTAGGCTCCACATAAAATTTCTTGCAATAGGGGATCCAATGCTT
TGCAAATTGAGATGCCTCTATGAGAGCATAAAATGTACTATCGTGAGCAG
CATCGTCTGAGAGATATACACTAAGCTTCTCTGTAGGATAATCATATGCC
ATGACCGATAAAACAGTGTTGATCACCATGATTGGTTGCTCTGTCTTGGG
GTCTGCTGTGCATACAAAAATATCCATCCCGGGCAAGTCATTCTCATATC
TGCAAATGAAAAAAAATATATATATTTGCTTCCTTGCCATGATAATCAAG
TTTTAAATCTTTTCCATTAACTTGNTAATAAGAATGCACAAATATGTATA
TTTCTGTTGTATGTTTGAGTCTTTAGAAATACAGCTCATCTGTGTCCTTC
TAGCTTTTCTATTTCATTATTAA
back to top