CV712201

Overview
NameCV712201
Unique NameCV712201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 5.495e-18
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = -2
Query:  352 DLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPT--EKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEA 639
            +LP +D+ V TADP  E P++ +NTVLS++A DYP   E+L+ Y+SDD     T +AL EA+ FA  W+P+C+++ V  R+P  YF S S P     A
Sbjct:  133 ELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYFSSSSSPESGGPA 230          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.495e-18
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = -2
Query:  352 DLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPT--EKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEA 639
            +LP +D+ V TADP  E P++ +NTVLS++A DYP   E+L+ Y+SDD     T +AL EA+ FA  W+P+C+++ V  R+P  YF S S P     A
Sbjct:  133 ELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYFSSSSSPESGGPA 230          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.495e-18
Identity = 37/84 (44.05%), Postives = 60/84 (71.43%), Query Frame = -2
Query:  388 DLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 639
            +LPG+D+FV T DP  E  +  +N++LS++A DYP ++ + YLSDD      + A++E ++FA+ W+P+C+K  VEPR+P +YF
Sbjct:  174 ELPGVDVFVTTVDPVDEPILYTVNSILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRAPESYF 257          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.652e-17
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = -2
Query:  388 ARKQIYIFFFICRYEND-----LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 687
            A +  Y+     RYE       L G+D+FV  AD   E P+   NTVLSV+A DYP   ++ Y+ DD A    F +L EA+ FA+ WIP+C++  VEPR+P  YF
Sbjct:  102 ANRVTYLDRLASRYEKGGEASRLAGVDVFVAAADAAREPPLATANTVLSVLAADYPAGGVACYVHDDGADMLVFESLFEAAGFARRWIPFCRRHGVEPRAPELYF 206          
The following BLAST results are available for this feature:
BLAST of CV712201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLH2_ORYSJ5.495e-1844.90Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH2_ORYSI5.495e-1844.90Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLF4_ORYSJ5.495e-1844.05Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CESAB_ORYSJ4.652e-1742.86Putative cellulose synthase A catalytic subunit 11... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A24_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712201 ID=CV712201; Name=CV712201; organism=Citrus sinensis; type=EST; length=823bp
CTTCAATTCAGCAAAGCATGATAAGATAACAGCTTTTGTTTCTTTAAATA
TTAATAGGACATACTTGAAGAATGGTGTCGTGGTCACGTTGGGAAAAAAA
TGAATCCCACTGCGAAAATCCTTTATATTTTGACCTTACTTCTTCAGGTA
TTCGGCTTAGCTTGGCTGCGGTTATGATTCCATTTTCCATATCTTCATAT
AATTTCTAGACAGAGAAAAAAAATTGCATGAAGGCTATGTACTACATCTA
AAAGAACCGAAAGCAGTCAAAAGAAGTAACCAGTTCCCATTCCTTGATTC
ATGCTATACTATATTTTGACTTATTTGTACCTTGATGGCTAAAAACCCTT
TAGCCTCCTCTGCCTCATGTGGTTCAGAAATTGACTGAAAATAAGCACCT
GGTGACCTAGGCTCCACATAAAATTTCTTGCAATAGGGGATCCAATGCTT
TGCAAATTGAGATGCCTCTATGAGAGCATAAAATGTACTATCGTGAGCAG
CATCGTCTGAGAGATATACACTAAGCTTCTCTGTAGGATAATCATATGCC
ATGACCGATAAAACAGTGTTGATCACCATGATTGGTTGCTCTGTCTTGGG
GTCTGCTGTGCATACAAAAATATCCATCCCGGGCAAGTCATTCTCATATC
TGCAAATGAAAAAAAATATATATATTTGCTTCCTTGCCATGATAATCAAG
TTTTAAATCTTTTCCATTAACTTGNTAATAAGAATGCACAAATATGTATA
TTTCTGTTGTATGTTTGAGTCTTTAGAAATACAGCTCATCTGTGTCCTTC
TAGCTTTTCTATTTCATTATTAA
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