CV712190

Overview
NameCV712190
Unique NameCV712190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.019e-67
Identity = 131/224 (58.48%), Postives = 160/224 (71.43%), Query Frame = -1
Query:  163 LHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 834
            L YTSG  F             +QL AEHSQRLES FQSIPG+Q+VACST YNAKGL+K+AI  + P++  EHVLLYNLK  +PDEEY   L++AE+VR G  VTI+TYSRMRYHV+ A + LV  G DPE+ID+ SLKP DL+TI  SIKKTH+++IVEEC +TGGI A L + I    +D LD+P V LSS+DVP PY G LE+ T++QP QIV  V  L Q
Sbjct:  101 LQYTSGGNFNIPVVIRGPGGIGKQLAAEHSQRLESCFQSIPGLQIVACSTAYNAKGLLKSAIIEKKPILFLEHVLLYNLKGFVPDEEYYLPLDKAEVVRSGSDVTIVTYSRMRYHVLAAVEKLVLNGQDPEIIDLISLKPLDLHTISKSIKKTHKIVIVEECAQTGGIAAELISLINTYLYDELDSPAVRLSSKDVPIPYNGNLEKSTLIQPDQIVDVVTNLLQ 324          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.533e-39
Identity = 88/229 (38.43%), Postives = 141/229 (61.57%), Query Frame = -1
Query:  163 RLHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLK----ERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 837
            + HY SG +                +GA+HSQ   +++ S+PG+++VA  +  + +GL+K+AIR +NPV+  E  LLYN K    ++  D+EY+  + +A++ R G+ VTI+ +SR+  + M+AA+ L  +G   EVI++R+++P D  TI NS+KKT++++ VEE     GIGA ++A + E+  DYLDAPI  +   DVP PYA  LE   +VQ   IV A +++ Q
Sbjct:  125 KTHYMSGGKVFNPIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLLKSAIRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPIGKAKVEREGKDVTIVGFSRIVSNCMEAAEILAKEGISAEVINLRTIRPIDAETIVNSLKKTNKLVTVEEGWAQSGIGAEISALMMEHAFDYLDAPIERICGADVPMPYASNLENAAMVQTQNIVNAAKRVTQ 353          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.028e-36
Identity = 82/224 (36.61%), Postives = 129/224 (57.59%), Query Frame = -1
Query:  166 RLHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 837
            + HY SG Q               ++ A+HSQ   + +  +PG+++VA  +  + KGLM  AIR +NPVI  E+ +LY     +P+        +A+++R G  VTI+T+S      + AA  L N   D EVID+R++KP D  TI  S+KKT+R++IVEE     G+GAS+ + + +   DYLDAPI  +S +DVP P+A  LE+  +   + ++ AV+++C
Sbjct:   99 KTHYMSGGQAKCPIVFRGPNGAASRVAAQHSQNYTACYSHVPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVPETIEPIPFGQAKILREGSSVTIVTFSIQVKLALDAANVLQNDNIDCEVIDLRTIKPLDTDTIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPFAVNLEKLALPSESDVIEAVKKVC 322          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.991e-35
Identity = 80/225 (35.56%), Postives = 132/225 (58.67%), Query Frame = -1
Query:  166 RLHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPD-EEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 837
            + HY SG Q               ++GA+H+Q    ++ ++PG+ ++A     +AKGL+KAAIRS++PV+  E  LLY     +P  ++++  + +A ++R G+ VTI++YS      + AA+ L  +G D EVID+R+L+P D  TI  S+ KT+R++ VE+      I + + A   E   D LDAP++ +++ D PTPYA  LE+  +V P  I+ AV ++C
Sbjct:  235 KTHYMSGGQVRCPIVFRGPNGAAPRVGAQHTQNFGPWYAAVPGLVVLAPYDAIDAKGLLKAAIRSDDPVVFLECELLYGKTFDVPKMDDFVLPIGKARIIREGKDVTIVSYSIGVSFALTAAEALAKEGIDAEVIDLRTLRPLDKETILQSLAKTNRIVTVEDGWPVCSISSEIAAIAMEEGFDNLDAPVLRVTNADTPTPYAENLEKKGLVNPEAIIEAVRKVC 459          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.103e-35
Identity = 80/224 (35.71%), Postives = 127/224 (56.70%), Query Frame = -1
Query:  166 RLHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 837
            + HY SG Q               ++ A+HSQ   + +  IPG+++VA  +  + KGLM  AIR +NPV+  E+ +LY     +P         +A+++R G  VTI+T+S      + AA  + N   D EVID+R++KP D  TI  S+KKT+R+++VEE     G+GAS+ + + +   DYLDAPI  +S +D+P PYA  LE   +   + ++ AV+++C
Sbjct:   99 KTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVVFLENEILYGHSFDVPKTIEPIPFGQAKILREGSSVTIVTFSIQVKLALDAANFVQNDNIDCEVIDLRTIKPLDTETIIESVKKTNRLVVVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDLPLPYAVNLETLALPSESDVIEAVKKVC 322          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.485e-34
Identity = 80/224 (35.71%), Postives = 127/224 (56.70%), Query Frame = -1
Query:  166 RLHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 837
            + HY SG Q               ++ A+HSQ   + +  IPG+++VA  +  + KGLM  AIR +NPVI  E+ +LY     +PD        +A++++ G +VTI+T+S      +     L N   D E+ID+R++KP D  +I  S+KKT+R++IVEE     G+GAS+ + + +   DYLDAPI  +S +DVP PYA  LE+  +     ++ AV+++C
Sbjct:   99 KTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVPDIIEPIPFSKAKILKEGSNVTIVTFSIQVKLALDVVNILQNDNIDCELIDLRTIKPLDTDSIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLAMPSANDLIEAVKKVC 322          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.485e-34
Identity = 76/222 (34.23%), Postives = 129/222 (58.11%), Query Frame = -1
Query:  166 YTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPD-EEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 828
            Y SG Q               ++ A+HSQ   +++  IPG+++V   T  +AKGL+KAAIR  NPVI  E+ +LY     +P  ++++  + +A + R G+  T++++     + ++AA  L  +G D E+ID+R+++P DL T+  S+KKT R++ VEE      +G  +   + +   DYLDAPI+ ++ +DVP PYA  LE+  +   A++V AV+ +C
Sbjct:  237 YMSGGQMGAPIVFRGPSGAAARVAAQHSQCYAAWYSHIPGLKVVMPYTAADAKGLLKAAIRDPNPVIFLENEILYGQSFEVPKLDDFVLPIGKARIHRTGKDATLVSFGIGMTYAIKAAAELEAQGIDVEIIDLRTIRPMDLPTVIESVKKTGRLVTVEEGYPQSSVGTEIATRVMQQAFDYLDAPILTIAGKDVPMPYAANLEKLALPNVAEVVDAVKAVC 458          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.939e-34
Identity = 80/224 (35.71%), Postives = 126/224 (56.25%), Query Frame = -1
Query:  166 RLHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 837
            + HY SG Q               ++ A+HSQ   + +  IPG+++VA  +  + KGLM  AIR +NPVI  E+ +LY     +PD        +A++++ G +VTI+T+S      +     L N   D E+ID+R++KP D   I  S+KKT+R++IVEE     G+GAS+ + + +   DYLDAPI  +S +DVP PYA  LE+  +     ++ AV+++C
Sbjct:   99 KTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVPDIIEPIPFSKAKILKEGSNVTIVTFSIQVKLALDVVNILQNDNIDCELIDLRTIKPLDTNMIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLAMPSANDLIEAVKKVC 322          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODBB_BACSU (2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis GN=bfmBAB PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.532e-34
Identity = 76/198 (38.38%), Postives = 125/198 (63.13%), Query Frame = -1
Query:  163 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL-KERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPT-PYAGTLEEWTVVQPAQIVTAVEQLCQ 750
            HSQ +E+ F + PG+++V  STPY+AKGL+KAA+R E+PV+ FEH   Y L K  +P ++Y+  + +A++ R G+ +T++TY    +  +QAA+ L   G    V+D+R++ P D   I  +  KT +VL+V E  + G I + + A I+E+    LDAPI  L+  D+P  PYA T+E++ +V P ++  A+ +L +
Sbjct:  129 HSQSVEAIFANQPGLKIVMPSTPYDAKGLLKAAVRDEDPVLFFEHKRAYRLIKGEVPADDYVLPIGKADVKREGDDITVITYGLCVHFALQAAERLEKDGISAHVVDLRTVYPLDKEAIIEAASKTGKVLLVTEDTKEGSIMSEVAAIISEHCLFDLDAPIKRLAGPDIPAMPYAPTMEKYFMVNPDKVEAAMRELAE 326          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 5.642e-34
Identity = 76/203 (37.44%), Postives = 125/203 (61.58%), Query Frame = -1
Query:  166 LGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN----LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 762
            +GA+HSQ   +++ S+PG++++A  +  +A+GL+KAAIR  +PV+  E+ LLY     + E   D  +   + +A++ R G+ VTI+T+S+M    ++AA+ L  +G   EVI++RS++P D  TI  S++KT R++ VEE     G+ A + A++ E    YLDAP+  ++  DVP PYA  LE   + Q   IV A ++ C
Sbjct:  157 VGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGVCAEICASVVEESFSYLDAPVERIAGADVPMPYAANLERLALPQIEDIVRASKRAC 359          
The following BLAST results are available for this feature:
BLAST of CV712190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_CYACA1.019e-6758.48Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_DICDI1.533e-3938.43Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICFE6.028e-3636.61Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYMMO2.991e-3535.56Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN5.103e-3535.71Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR1.485e-3435.71Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RHIME1.485e-3434.23Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICTY1.939e-3435.71Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_BACSU2.532e-3438.382-oxoisovalerate dehydrogenase subunit beta OS=Bac... [more]
ODPB_ARATH5.642e-3437.44Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A19_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712190 ID=CV712190; Name=CV712190; organism=Citrus sinensis; type=EST; length=837bp
CCCCTTTTTTTTTAGAACAACTTGATGATTTCATGAATAGTTGCACGTTT
TTATCGCACAAAATTGCTAACAATCTTAATAAATAAATATTCAAAGCAAA
GCTGCTGAGAACTAACACTGCATAGATAGATTCGGTTATGACACTTCGGT
ATTCAAAAACTATTGGCAAAGCTGCTCAACTGCTGTCACAATCTGGGCAG
GTTGAACCACAGTCCATTCCTCCAACGTGCCGGCATATGGAGTTGGCACG
TCCTGTGATGATAAGCATACAATAGGAGCATCCAAGTAATCATGGAAATT
CTCAGTGATAGCTGCAGTTAAACTAGCACCAATTCCACCAGTCCGCATGC
ACTCCTCCACAATCAGTACACGATGTGTCTTTTTAATTGAATTTCCAATG
GTATAAAGATCAAATGGTTTCAATGACCTGATGTCAATAACCTCAGGATC
ATACCCTTTGTTTACCAAAGTTTTAGCAGCTTGCATCACATGATACCTCA
TTCGAGAATAGGTTAAAATAGTGACATGCTCCCCAGGCCTAACCATCTCA
GCTTCCTCAAGATTACAAATGTATTCCTCATCTGGAATCCTTTCCTTGAG
GTTGTAAAGCAACACATGCTCGAAAAGTATAACTGGGTTCTCACTTCGGA
TTGCAGCTTTCATCAAGCCCTTGGCATTGTATGGGGTCGAGCATGCCACC
ATTTGAATTCCGGGGATTGATTGAAAATATGACTCAAGGCGTTGGGAATG
CTCAGCTCCAAGTTGTCGGCCAACTCCACCAGGTCCACGGATAACTATTG
GTATGGTAAACTGCTCACCAGAAGTATAGTGGAGCCT
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