CV712190

Overview
NameCV712190
Unique NameCV712190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.368e-34
Identity = 79/224 (35.27%), Postives = 128/224 (57.14%), Query Frame = -1
Query:  166 RLHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 837
            + HY SG Q               ++ A+HSQ   + +  IPG+++VA  +  + KGLM  AIR +NPVI  E+ +LY     I +        +A++++ G+ VTI+T+S      + AA  L +   + EVID+R++KP D+ TI  S+KKT R++++EE     GIGA++ A + +   DYLDAP+  +S +DVP PYA  LE+  +     ++ AV+++C
Sbjct:   99 KTHYMSGGQVRCPIVFRGPNGAASRVAAQHSQNYAACYSYIPGLKVVAPYSAEDHKGLMITAIRDDNPVIFLENEILYGHSFDISENVEPIPFGKAKVLKEGDSVTIVTFSIQVKLALDAANILQSDNINCEVIDLRTIKPLDIDTIIESVKKTGRLVVIEEGWFFAGIGATIAAIVMKEAFDYLDAPVEIVSGKDVPLPYAVNLEKLALPSEYDVINAVKKVC 322          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODBB_THET2 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.623e-34
Identity = 78/203 (38.42%), Postives = 119/203 (58.62%), Query Frame = -1
Query:  232 RLHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA 837
            +L Y SG QFT             + G  HSQ  E++F    G+++VA STPY+AKGL+KAAIR E+PV+  E   LY ++KE +P+E+Y  ++ +A + R G+ +T++ Y  +   V+QAA  L   G   EV+D+R+L P+D   + NS+ KT RV++V +  R     + + A I E+  D L AP + ++  D P PYA
Sbjct:  100 KLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLSIGKAALRREGKDLTLIGYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA 302          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.144e-33
Identity = 78/203 (38.42%), Postives = 118/203 (58.13%), Query Frame = -1
Query:  232 RLHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA 837
            +L Y SG QFT             + G  HSQ  E++F    G+++VA STPY+AKGL+KAAIR E+PV+  E   LY ++KE +P+E+Y   + +A + R G+ +T++ Y  +   V+QAA  L   G   EV+D+R+L P+D   + NS+ KT RV++V +  R     + + A I E+  D L AP + ++  D P PYA
Sbjct:  100 KLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLPIGKAALRREGKDLTLIGYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA 302          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 4.043e-32
Identity = 71/195 (36.41%), Postives = 112/195 (57.44%), Query Frame = -1
Query:  172 AEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 756
            A+HSQ L   F  IPG+++V  STPY+ KGL+  AIR  +PVI  EH  LY L+  +P+  Y     EA +VR G+ V+I+TY  M +  ++AA TL  +G + E++D+R+L P D+ T+  S++ T R+++V+E      I   ++A + +     L A I  +     P P++ TLE+  +   AQI  A  +
Sbjct:  137 AQHSQMLTPLFTHIPGLKVVCPSTPYDTKGLLIQAIRDNDPVIFCEHKNLYGLEGEVPEGAYAIPFGEANIVRDGKDVSIVTYGLMVHRALEAAATLAKEGIEAEIVDLRTLSPLDMDTVLESVENTGRLVVVDEASPRCNIATDISAQVAQQAFGALKAGIEMVCPPHTPVPFSPTLEDLYIPSAAQIAAAARK 331          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 6.896e-32
Identity = 76/202 (37.62%), Postives = 123/202 (60.89%), Query Frame = -1
Query:  172 LGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITE-NFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 762
            + A+HSQ   +++   PG+++V   +  +AKGL+KAAIR +NPV+  E+ +LY     + DE    +++  + +A++ R G+HVTI++YSR     ++AAK L   G   EVI++RSL+PFD  +I  S+ KTH ++ VE      GIG+ + A + E +  D LDAP++ ++  DVP PY  TLE   +     +V AV++
Sbjct:  146 VAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLENEILYGQSFPVGDEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQLEAIGVSAEVINLRSLRPFDFESIRQSVHKTHHLVSVETGWPFAGIGSEIAAQVMESDVFDQLDAPLLRVTGVDVPMPYTQTLEAAALPTAEHVVKAVKK 347          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.007e-31
Identity = 73/203 (35.96%), Postives = 119/203 (58.62%), Query Frame = -1
Query:  166 LGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN----LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 762
            +GA+HS    S++ S PG++++   +  +A+GL+KAAIR  +PV+  E+ LLY     +   + D  +   + +A++ R G+ VTI  +S+M    ++AA+ L  +G   EVI++RS++P D  TI  S++KT+R++ VEE     G+GA +  ++ E    YLDA +  +   DVP PYAG LE   V     IV A ++ C
Sbjct:  147 VGAQHSHCYASWYGSCPGLKVLVPHSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFWLPIGKAKIEREGKDVTITAFSKMVGFALKAAEILEKEGISAEVINLRSIRPLDRPTINASVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDATVERIGGADVPMPYAGNLERLVVPHVEDIVRAAKRAC 349          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.838e-31
Identity = 73/202 (36.14%), Postives = 127/202 (62.87%), Query Frame = -1
Query:  172 LGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITEN-FHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 762
            + A+HSQ   +++   PG+++V+  +  +AKGL+K+AIR  NPV++ E+ L+Y +   +P E    +++  + +A++ R G HVTI+ +SR   H ++AA  L  +G + EVI++R+++P D+ TI  S+ KT+ ++ VE      G+GA + A I E    ++LDAP V ++  DVP PYA  LE+ +V Q   I+ A+++
Sbjct:  154 VAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSEAQSKDFLIPIGKAKIERQGTHVTIVAHSRPVGHCLEAATVLSKEGIECEVINLRTIRPMDIETIEGSVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSVPQVKDIIFAIKK 355          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ACOB_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Bacillus subtilis GN=acoB PE=3 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 7.625e-31
Identity = 71/196 (36.22%), Postives = 111/196 (56.63%), Query Frame = -1
Query:  169 AEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 756
            A+HSQ L   F SIPG++ V  S PY+AKGL+ AAI   +PV  FE    YN+K  +P++ Y   L +A++ R G  VT+    +     ++AA  L  +G + EV+D RSL P D   I  S++KT+R++I++E      I   + A + +   D LDAPI  +++   P P++  LE+  +  P +IV+   +L
Sbjct:  140 AQHSQSLYGLFTSIPGLKTVVPSNPYDAKGLLLAAIEDNDPVFFFEDKTSYNMKGEVPEDYYTIPLGKADIKREGNDVTLFAVGKQVNTALEAAAQLSERGIEAEVLDPRSLSPLDEDAIFTSLEKTNRLIIIDEANPRCSIATDIAALVADKGFDLLDAPIKRITAPHTPVPFSPVLEDQYLPTPDKIVSVTLEL 335          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_STAAW (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MW2) GN=pdhB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.301e-30
Identity = 67/180 (37.22%), Postives = 112/180 (62.22%), Query Frame = -1
Query:  214 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 750
            H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M    M+AA+ L   GY  EVID+R+++P D+ TI  S++KT R ++V+E  R  G+GA++ A ++E     L+API  +++ D   P+      W
Sbjct:  129 HADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPFTQAENVW 308          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_STAAU (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus GN=pdhB PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.301e-30
Identity = 67/180 (37.22%), Postives = 112/180 (62.22%), Query Frame = -1
Query:  214 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 750
            H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M    M+AA+ L   GY  EVID+R+++P D+ TI  S++KT R ++V+E  R  G+GA++ A ++E     L+API  +++ D   P+      W
Sbjct:  129 HADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPFTQAENVW 308          
The following BLAST results are available for this feature:
BLAST of CV712190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_RICBR7.368e-3435.27Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_THET29.623e-3438.422-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_THET82.144e-3338.422-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ACOB_RALEH4.043e-3236.41Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_CAEEL6.896e-3237.62Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PEA2.007e-3135.96Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_BOVIN5.838e-3136.14Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ACOB_BACSU7.625e-3136.22Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_STAAW1.301e-3037.22Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAU1.301e-3037.22Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A19_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712190 ID=CV712190; Name=CV712190; organism=Citrus sinensis; type=EST; length=837bp
CCCCTTTTTTTTTAGAACAACTTGATGATTTCATGAATAGTTGCACGTTT
TTATCGCACAAAATTGCTAACAATCTTAATAAATAAATATTCAAAGCAAA
GCTGCTGAGAACTAACACTGCATAGATAGATTCGGTTATGACACTTCGGT
ATTCAAAAACTATTGGCAAAGCTGCTCAACTGCTGTCACAATCTGGGCAG
GTTGAACCACAGTCCATTCCTCCAACGTGCCGGCATATGGAGTTGGCACG
TCCTGTGATGATAAGCATACAATAGGAGCATCCAAGTAATCATGGAAATT
CTCAGTGATAGCTGCAGTTAAACTAGCACCAATTCCACCAGTCCGCATGC
ACTCCTCCACAATCAGTACACGATGTGTCTTTTTAATTGAATTTCCAATG
GTATAAAGATCAAATGGTTTCAATGACCTGATGTCAATAACCTCAGGATC
ATACCCTTTGTTTACCAAAGTTTTAGCAGCTTGCATCACATGATACCTCA
TTCGAGAATAGGTTAAAATAGTGACATGCTCCCCAGGCCTAACCATCTCA
GCTTCCTCAAGATTACAAATGTATTCCTCATCTGGAATCCTTTCCTTGAG
GTTGTAAAGCAACACATGCTCGAAAAGTATAACTGGGTTCTCACTTCGGA
TTGCAGCTTTCATCAAGCCCTTGGCATTGTATGGGGTCGAGCATGCCACC
ATTTGAATTCCGGGGATTGATTGAAAATATGACTCAAGGCGTTGGGAATG
CTCAGCTCCAAGTTGTCGGCCAACTCCACCAGGTCCACGGATAACTATTG
GTATGGTAAACTGCTCACCAGAAGTATAGTGGAGCCT
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