CV712190

Overview
NameCV712190
Unique NameCV712190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_STAAS (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=pdhB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.301e-30
Identity = 67/180 (37.22%), Postives = 112/180 (62.22%), Query Frame = -1
Query:  214 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 750
            H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M    M+AA+ L   GY  EVID+R+++P D+ TI  S++KT R ++V+E  R  G+GA++ A ++E     L+API  +++ D   P+      W
Sbjct:  129 HADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPFTQAENVW 308          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_STAAR (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MRSA252) GN=pdhB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.301e-30
Identity = 67/180 (37.22%), Postives = 112/180 (62.22%), Query Frame = -1
Query:  214 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 750
            H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M    M+AA+ L   GY  EVID+R+++P D+ TI  S++KT R ++V+E  R  G+GA++ A ++E     L+API  +++ D   P+      W
Sbjct:  129 HADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPFTQAENVW 308          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_STAAN (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain N315) GN=pdhB PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.301e-30
Identity = 67/180 (37.22%), Postives = 112/180 (62.22%), Query Frame = -1
Query:  214 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 750
            H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M    M+AA+ L   GY  EVID+R+++P D+ TI  S++KT R ++V+E  R  G+GA++ A ++E     L+API  +++ D   P+      W
Sbjct:  129 HADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPFTQAENVW 308          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_STAAM (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.301e-30
Identity = 67/180 (37.22%), Postives = 112/180 (62.22%), Query Frame = -1
Query:  214 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 750
            H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M    M+AA+ L   GY  EVID+R+++P D+ TI  S++KT R ++V+E  R  G+GA++ A ++E     L+API  +++ D   P+      W
Sbjct:  129 HADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPFTQAENVW 308          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_STAAC (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain COL) GN=pdhB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.301e-30
Identity = 67/180 (37.22%), Postives = 112/180 (62.22%), Query Frame = -1
Query:  214 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 750
            H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M    M+AA+ L   GY  EVID+R+++P D+ TI  S++KT R ++V+E  R  G+GA++ A ++E     L+API  +++ D   P+      W
Sbjct:  129 HADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPFTQAENVW 308          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.301e-30
Identity = 67/180 (37.22%), Postives = 111/180 (61.67%), Query Frame = -1
Query:  214 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 750
            HS  LE      PG+++V  STPY+AKGL+ +AIR  +PVI  EH+ LY + ++ +P+ EY   + +A++ R G+ +TI+ Y  M +  ++AA  L  +G   EV+D+R+++P D+ TI  S++KT R ++V+E  R  GI A++ A I E     L+AP++ +++ D   P+A     W
Sbjct:  129 HSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQAESVW 308          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_BACSU (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus subtilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.699e-30
Identity = 70/209 (33.49%), Postives = 118/209 (56.46%), Query Frame = -1
Query:  214 RLHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 837
            R+ Y SG ++T                  H+  LE      PGI++V  STPY+AKGL+ +AIR  +PV+  EH+ LY + ++ +P+EEY   L +A++ R G  ++I+TY  M +  ++AA  L   G   EV+D+R++ P D+ TI  S++KT R ++V+E  +  GI A++ A I +     L+AP++ +++ D   P++     W
Sbjct:  100 RMRYRSGGRWTSPVTIRSPFGGGVHTPELHADSLEGLVAQQPGIKVVIPSTPYDAKGLLISAIRDNDPVVFLEHMKLYRSFRQEVPEEEYTIELGKADVKREGTDLSIITYGAMVHESLKAADELEKDGISAEVVDLRTVSPLDIDTIIASVEKTGRAIVVQEAQKQAGIAANVVAEINDRAILSLEAPVLRVAAPDTVFPFSQAESVW 308          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.218e-30
Identity = 80/228 (35.09%), Postives = 127/228 (55.70%), Query Frame = -1
Query:  169 RLHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLE---EAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITEN-FHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 837
            + HY SG                  +GA+HSQ    ++ SIPG++++   +  +A+GL+KAAIR  NPV+  E+ LLY     I +E          +A++ R G  ++I+TY+R     ++AA+ L  K G   EVI++RS++P D   I  ++KKT+ ++ VE    + G+GA + A + E+   DYLDAPI  ++  DVPTPYA  LE++       IV AV+++
Sbjct:  135 KTHYMSGGTQKCQMVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAAIRDPNPVVFLENELLYGESFEISEEALSPEFTLPYKAKIEREGTDISIVTYTRNVQFSLEAAEILQKKYGVSAEVINLRSIRPLDTEAIIKTVKKTNHLITVESTFPSFGVGAEIVAQVMESEAFDYLDAPIQRVTGADVPTPYAKELEDFAFPDTPTIVKAVKEV 362          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 6.455e-30
Identity = 69/202 (34.16%), Postives = 126/202 (62.38%), Query Frame = -1
Query:  172 LGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITEN-FHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 762
            + A+HSQ   +++   PG+++V+     +AKGL+K+AIR +NPV++ E+ L+Y +   +P E    +++  + +A++ R G H+T++ +SR   H ++AA  L  +G + EVI++R+++P D+  I  S+ KT+ ++ VE      G+GA + A I E    ++LDAP V ++  DVP PYA  LE+ ++ Q   I+ A+++
Sbjct:  154 VAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDDNPVVMLENELMYGVAFELPTEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEAIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 355          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.455e-30
Identity = 70/202 (34.65%), Postives = 126/202 (62.38%), Query Frame = -1
Query:  172 LGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITEN-FHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 762
            + A+HSQ   +++   PG+++V+     +AKGL+K+AIR  NPV++ E+ L+Y +    P E    +++  + +A++ R G H+T++++SR   H ++AA  L  +G + EVI++R+++P D+ TI  S+ KT+ ++ VE      G+GA + A I E    ++LDAP V ++  DVP PYA  LE+ ++ Q   I+ A+++
Sbjct:  154 VAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 355          
The following BLAST results are available for this feature:
BLAST of CV712190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_STAAS1.301e-3037.22Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAR1.301e-3037.22Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAN1.301e-3037.22Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAM1.301e-3037.22Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAC1.301e-3037.22Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACST1.301e-3037.22Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACSU1.699e-3033.49Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_YEAST2.218e-3035.09Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RAT6.455e-3034.16Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PONAB6.455e-3034.65Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A19_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712190 ID=CV712190; Name=CV712190; organism=Citrus sinensis; type=EST; length=837bp
CCCCTTTTTTTTTAGAACAACTTGATGATTTCATGAATAGTTGCACGTTT
TTATCGCACAAAATTGCTAACAATCTTAATAAATAAATATTCAAAGCAAA
GCTGCTGAGAACTAACACTGCATAGATAGATTCGGTTATGACACTTCGGT
ATTCAAAAACTATTGGCAAAGCTGCTCAACTGCTGTCACAATCTGGGCAG
GTTGAACCACAGTCCATTCCTCCAACGTGCCGGCATATGGAGTTGGCACG
TCCTGTGATGATAAGCATACAATAGGAGCATCCAAGTAATCATGGAAATT
CTCAGTGATAGCTGCAGTTAAACTAGCACCAATTCCACCAGTCCGCATGC
ACTCCTCCACAATCAGTACACGATGTGTCTTTTTAATTGAATTTCCAATG
GTATAAAGATCAAATGGTTTCAATGACCTGATGTCAATAACCTCAGGATC
ATACCCTTTGTTTACCAAAGTTTTAGCAGCTTGCATCACATGATACCTCA
TTCGAGAATAGGTTAAAATAGTGACATGCTCCCCAGGCCTAACCATCTCA
GCTTCCTCAAGATTACAAATGTATTCCTCATCTGGAATCCTTTCCTTGAG
GTTGTAAAGCAACACATGCTCGAAAAGTATAACTGGGTTCTCACTTCGGA
TTGCAGCTTTCATCAAGCCCTTGGCATTGTATGGGGTCGAGCATGCCACC
ATTTGAATTCCGGGGATTGATTGAAAATATGACTCAAGGCGTTGGGAATG
CTCAGCTCCAAGTTGTCGGCCAACTCCACCAGGTCCACGGATAACTATTG
GTATGGTAAACTGCTCACCAGAAGTATAGTGGAGCCT
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