CV712190

Overview
NameCV712190
Unique NameCV712190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.455e-30
Identity = 71/202 (35.15%), Postives = 125/202 (61.88%), Query Frame = -1
Query:  172 LGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITEN-FHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 762
            + A+HSQ   +++   PG+++V+     +AKGL+K+AIR  NPV++ E+ L+Y +   +P E    +++  + +A++ R G H+T++ +SR   H ++AA  L  +G + EVI++R+++P D+  I  S+ KT+ ++ VE      G+GA + A I E    ++LDAP V ++  DVP PYA  LE+ +V Q   I+ AV++
Sbjct:  154 VAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGVAFELPAEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEAIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKVLEDNSVPQVKDIIFAVKK 355          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_HUMAN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 6.455e-30
Identity = 70/202 (34.65%), Postives = 126/202 (62.38%), Query Frame = -1
Query:  172 LGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITEN-FHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 762
            + A+HSQ   +++   PG+++V+     +AKGL+K+AIR  NPV++ E+ L+Y +    P E    +++  + +A++ R G H+T++++SR   H ++AA  L  +G + EVI++R+++P D+ TI  S+ KT+ ++ VE      G+GA + A I E    ++LDAP V ++  DVP PYA  LE+ ++ Q   I+ A+++
Sbjct:  154 VAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 355          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.101e-29
Identity = 75/227 (33.04%), Postives = 125/227 (55.07%), Query Frame = -1
Query:  172 RLHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITE-NFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 837
            + HY S  +F               +  +HSQ   ++F   PG+++V      +A+GL+KAA+R +NPVI  E+ +LY +K  +  E    +++    +A++ RPG+ +TI++ S      + AA  L   G D EVI++R ++P D  T+ +S+ KT  ++ VE      G+GA ++A +TE +   YLD PI+ ++  DVP PYA  LE   + QPA +V  V++
Sbjct:  130 KAHYMSAGRFHVPIVFRGANGAAVGVAQQHSQDFTAWFMHCPGVKVVVPYDCEDARGLLKAAVRDDNPVICLENEILYGMKFPVSPEAQSPDFVLPFGQAKIQRPGKDITIVSLSIGVDVSLHAADELAKSGIDCEVINLRCVRPLDFQTVKDSVIKTKHLVTVESGWPNCGVGAEISARVTESDAFGYLDGPILRVTGVDVPMPYAQPLETAALPQPADVVKMVKK 356          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_STAES (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.878e-29
Identity = 63/180 (35.00%), Postives = 110/180 (61.11%), Query Frame = -1
Query:  214 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 750
            H+  LE      PG+++V  S PY+AKGL+ ++I+S +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  +T+++Y  M    ++AA+ L   GY  EVID+R+++P D+ T+  S++KT R ++V+E  R  G+GA + A + E     L+API  +++ D   P+      W
Sbjct:  129 HADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFREEVPEEEYKIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEKDGYSVEVIDLRTVQPIDIDTLVASVEKTGRAVVVQEAQRQAGVGAQVAAELAERAILSLEAPIARVAASDTIYPFTQAENVW 308          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_STAEQ (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.878e-29
Identity = 63/180 (35.00%), Postives = 110/180 (61.11%), Query Frame = -1
Query:  214 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 750
            H+  LE      PG+++V  S PY+AKGL+ ++I+S +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  +T+++Y  M    ++AA+ L   GY  EVID+R+++P D+ T+  S++KT R ++V+E  R  G+GA + A + E     L+API  +++ D   P+      W
Sbjct:  129 HADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFREEVPEEEYKIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEKDGYSVEVIDLRTVQPIDIDTLVASVEKTGRAVVVQEAQRQAGVGAQVAAELAERAILSLEAPIARVAASDTIYPFTQAENVW 308          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.453e-29
Identity = 74/205 (36.10%), Postives = 125/205 (60.98%), Query Frame = -1
Query:  166 LGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN----LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAA-KTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITE-NFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 762
            + A+HSQ    ++ SIPG+++V+  +  +A+GL+KAAIR  NPV++ E+ +LY     + +    E+++     A++ RPG+ +TI+  S      ++AA K   + G + EVI++RS++P D+ TI  S+KKT+R++ V++     GIG+ + A I E +  DYLDAP+  +S  DVP PY+  +E  +V   A +V A  + C
Sbjct:  159 VAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILYGKTFPISKEALSEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVEAEVINLRSIRPLDINTIAASVKKTNRIVTVDQAYSQHGIGSEIAAQIMESDAFDYLDAPVERVSMADVPMPYSHPVEAASVPN-ADVVVAAAKKC 362          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.453e-29
Identity = 86/243 (35.39%), Postives = 121/243 (49.79%), Query Frame = -1
Query:  163 RLHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-----------------LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQ-PAQIVTAVEQLCQ 837
            RL Y S   F                G  HSQ  E+ F  + G++ V  S PY+AKGL+ A I +++PVI  E   LYN                    ++PD  Y   L++A +VRPG  +T+LTY  M Y    AA      G D E+ID+RSL P DL TI  S+KKT R +I  E  RT G GA L + + E+   +L+API  ++  D P P+A   +EW     PA++  A +++ +
Sbjct:  113 RLRYRSAGDFIVPMTVRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIACIENDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPASQVPDGYYKVPLDKAAIVRPGAALTVLTYGTMVYVAQAAAD---ETGLDAEIIDLRSLWPLDLETIVASVKKTGRCVIAHEATRTCGFGAELMSLVQEHCFHHLEAPIERVTGWDTPYPHA---QEWAYFPGPARVGAAFKRVME 349          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODBB_PSEPU (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas putida GN=bkdA2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.203e-29
Identity = 84/243 (34.57%), Postives = 122/243 (50.21%), Query Frame = -1
Query:  163 RLHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-----------------LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQ-PAQIVTAVEQLCQ 837
            RL Y S  +F                G  HSQ  E+ F  + G++ V  S PY+AKGL+ A+I  ++PVI  E   LYN                     +PD  Y   L++A + RPG  V++LTY    Y    AA+     G D EVID+RSL P DL TI  S+KKT R ++V E  RT G GA L + + E+   +L+API  ++  D P P+A   +EW     P+++  A++++ +
Sbjct:  102 RLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE---ESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHA---QEWAYFPGPSRVGAALKKVME 338          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODBB_DICDI (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.998e-27
Identity = 70/176 (39.77%), Postives = 106/176 (60.23%), Query Frame = -1
Query:  238 GAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTP 759
            G  HSQ  ESYF   PG+++V  STP  AKGL+ A+IR ++PVI FE  L+Y +  E +P  +Y   L +A +V+ G+ +TI+ +      ++QA      K G   E+ID+R+++P+D+ T+  S+KKT RV+I  E  +TGG  A ++A I E    +L+API  +   D P P
Sbjct:  171 GHYHSQSPESYFGHTPGLKVVIPSTPIEAKGLLLASIREKDPVIFFEPKLMYRSAVEEVPIGDYEIPLGKARIVKEGKDITIIGWGAQMRVLLQAVNMAEEKLGISCELIDLRTIQPWDVETVVESVKKTGRVVISHEAPKTGGWAAEISATIQERCFLHLEAPIQRVCGYDTPFP 346          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_ACHLA (Pyruvate dehydrogenase E1 component subunit beta OS=Acholeplasma laidlawii GN=pdhB PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.330e-26
Identity = 72/226 (31.86%), Postives = 119/226 (52.65%), Query Frame = -1
Query:  163 RLHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL-KERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 837
            R+   S  QFT             +    HS+ LE  F SIPG+++V  STPY+AKGL+ AAI   +PV+  E   +Y   K+ +P E Y   + +A++V+ G  +T++ +  +   V +A K +  +G   E+ID+R++ P D  TI NS+KKT + ++V E +++ G  A L   + E    +L+A  V  +  D+  P A   E +   QP +I   + +L +
Sbjct:  100 RMRNRSRGQFTVPMVLRLPHGGGIRALEHHSEALEVLFGSIPGLKVVTPSTPYDAKGLLLAAINDPDPVVFLEPKRIYRAGKQEVPAEMYEIPIGKAKVVKQGTDMTVVAWGSIVREVEKAVKLVEAEGISVEIIDLRTISPIDEETILNSVKKTGKFMVVTEAVKSYGPAAELITMVNEKAFFHLEAAPVRFTGFDITVPLARG-EHYHFPQPEKIAAYIRKLAK 324          
The following BLAST results are available for this feature:
BLAST of CV712190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_MOUSE6.455e-3035.15Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_HUMAN6.455e-3034.65Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ASCSU1.101e-2933.04Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_STAES1.878e-2935.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAEQ1.878e-2935.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_SCHPO2.453e-2936.10Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODBB_PSEAE2.453e-2935.392-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODBB_PSEPU3.203e-2934.572-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODBB_DICDI2.998e-2739.772-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODPB_ACHLA4.330e-2631.86Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A19_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712190 ID=CV712190; Name=CV712190; organism=Citrus sinensis; type=EST; length=837bp
CCCCTTTTTTTTTAGAACAACTTGATGATTTCATGAATAGTTGCACGTTT
TTATCGCACAAAATTGCTAACAATCTTAATAAATAAATATTCAAAGCAAA
GCTGCTGAGAACTAACACTGCATAGATAGATTCGGTTATGACACTTCGGT
ATTCAAAAACTATTGGCAAAGCTGCTCAACTGCTGTCACAATCTGGGCAG
GTTGAACCACAGTCCATTCCTCCAACGTGCCGGCATATGGAGTTGGCACG
TCCTGTGATGATAAGCATACAATAGGAGCATCCAAGTAATCATGGAAATT
CTCAGTGATAGCTGCAGTTAAACTAGCACCAATTCCACCAGTCCGCATGC
ACTCCTCCACAATCAGTACACGATGTGTCTTTTTAATTGAATTTCCAATG
GTATAAAGATCAAATGGTTTCAATGACCTGATGTCAATAACCTCAGGATC
ATACCCTTTGTTTACCAAAGTTTTAGCAGCTTGCATCACATGATACCTCA
TTCGAGAATAGGTTAAAATAGTGACATGCTCCCCAGGCCTAACCATCTCA
GCTTCCTCAAGATTACAAATGTATTCCTCATCTGGAATCCTTTCCTTGAG
GTTGTAAAGCAACACATGCTCGAAAAGTATAACTGGGTTCTCACTTCGGA
TTGCAGCTTTCATCAAGCCCTTGGCATTGTATGGGGTCGAGCATGCCACC
ATTTGAATTCCGGGGATTGATTGAAAATATGACTCAAGGCGTTGGGAATG
CTCAGCTCCAAGTTGTCGGCCAACTCCACCAGGTCCACGGATAACTATTG
GTATGGTAAACTGCTCACCAGAAGTATAGTGGAGCCT
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