CV712190

Overview
NameCV712190
Unique NameCV712190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 9.028e-24
Identity = 67/204 (32.84%), Postives = 107/204 (52.45%), Query Frame = -1
Query:  235 RLHYTSGEQFTXXXXXXXXXXXXRQLGA-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLK-ERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPY 837
            +  Y SG+ F                GA  HSQ  E++F   PGI++V   +P+ AKGL+ + I  +NP I FE  +LY    E++P E Y   L +AE+++ G  VT++ +    + + + A     K G   EVID+R++ P+D+ T+  S+ KT R+LI  E   TGG  + +++ + E     L+API  +   D P P+
Sbjct:  164 KYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 9.028e-24
Identity = 67/204 (32.84%), Postives = 107/204 (52.45%), Query Frame = -1
Query:  235 RLHYTSGEQFTXXXXXXXXXXXXRQLGA-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLK-ERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPY 837
            +  Y SG+ F                GA  HSQ  E++F   PGI++V   +P+ AKGL+ + I  +NP I FE  +LY    E++P E Y   L +AE+++ G  VT++ +    + + + A     K G   EVID+R++ P+D+ T+  S+ KT R+LI  E   TGG  + +++ + E     L+API  +   D P P+
Sbjct:  164 KYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.179e-23
Identity = 68/204 (33.33%), Postives = 106/204 (51.96%), Query Frame = -1
Query:  235 RLHYTSGEQFTXXXXXXXXXXXXRQLGA-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLK-ERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPY 837
            +  Y SG+ F                GA  HSQ  E++F   PGI++V   +P+ AKGL+ + I  +NP I FE  +LY    E +P E Y   L +AE+++ G  VT++ +    + + + A     K G   EVID+R++ P+D+ TI  S+ KT R+LI  E   TGG  + +++ + E     L+API  +   D P P+
Sbjct:  166 KYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.179e-23
Identity = 66/204 (32.35%), Postives = 107/204 (52.45%), Query Frame = -1
Query:  235 RLHYTSGEQFTXXXXXXXXXXXXRQLGA-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLK-ERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPY 837
            +  Y SG+ F                GA  HSQ  E++F   PGI++V   +P+ AKGL+ + I  +NP I FE  +LY    E++P E Y   L +AE+++ G  VT++ +    + + + A     K G   EVID+R++ P+D+ T+  S+ KT R+L+  E   TGG  + +++ + E     L+API  +   D P P+
Sbjct:  166 KYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAAMAQEKLGVSCEVIDLRTILPWDVDTVCKSVIKTGRLLVSHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.540e-23
Identity = 64/195 (32.82%), Postives = 107/195 (54.87%), Query Frame = -1
Query:  169 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 750
            HS+ LE+ +  I G++ V  S PY+ KGL  AAI S +PVI FE   LY   ++ IP + Y   + EA ++  G  +TI++Y    + ++    +   K    E+ID+R++ P+D  T+ NS+KKT R+L+V E +++    A +  ++TE    YL      ++  D+  P A   E++     A+++ AV QL
Sbjct:  131 HSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIFFEPKKLYRAFRQEIPSDYYTVPIGEANLISEGSELTIVSYGPTMFDLINLVYSGELKDKGIELIDLRTISPWDKQTVFNSVKKTGRLLVVTEAVKSFTTSAEIITSVTEELFTYLKKAPQRVTGFDIVVPLARG-EKYQFEINARVIDAVNQL 324          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.480e-23
Identity = 64/195 (32.82%), Postives = 106/195 (54.36%), Query Frame = -1
Query:  169 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 750
            HS+ LE+ +  I G++ V  S PY+ KGL  AA+ S +PV+ FE   LY   ++ IP + Y   + +A ++  G ++TI++Y    + ++        K    E+ID+R++ P+D  T+ NS+KKT R+L+V E  +T      + A++TE    YL A    ++  D+  P A   E +     A+I+ AV QL
Sbjct:  132 HSETLEAIYGQIAGLKTVMPSNPYDTKGLFLAAVESPDPVVFFEPKKLYRAFRQEIPADYYTVPIGQANLISQGNNLTIVSYGPTMFDLINMVYGGELKDKGIELIDLRTISPWDKETVFNSVKKTGRLLVVTEAAKTFTTSGEIIASVTEELFSYLKAAPQRVTGWDIVVPLARG-EHYQFNLNARILEAVNQL 325          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_LEIXX (Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli subsp. xyli GN=pdhB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.033e-19
Identity = 55/173 (31.79%), Postives = 96/173 (55.49%), Query Frame = -1
Query:  232 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA 750
            H +  E+YF    G+++VA STP++A  +++ AI S++PVI FE +  Y  K  +   E    L  + +VR G   TI+ ++ M    ++AA+    +G   EV+D+RSL P D   +  S++KT R+++ +E      +G+ + A + E     L+AP++ ++  D P P A
Sbjct:  142 HQEAPEAYFAHTAGLRIVAPSTPHDAYWMIQEAIASDDPVIFFEPMSRYWPKGEVDTLENPLPLHASRIVRSGTDATIVAWAGMVPVALRAAEIAAEEGRSLEVVDLRSLAPIDYAPVLRSVQKTGRLVVAQEAPGIVSVGSEVAAVVGEKAFYSLEAPVLRVAGFDTPFPPA 314          
The following BLAST results are available for this feature:
BLAST of CV712190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODBB_RAT9.028e-2432.842-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE9.028e-2432.842-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_HUMAN1.179e-2333.332-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_BOVIN1.179e-2332.352-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODPB_MYCGE1.540e-2332.82Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCPN4.480e-2332.82Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_LEIXX1.033e-1931.79Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A19_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712190 ID=CV712190; Name=CV712190; organism=Citrus sinensis; type=EST; length=837bp
CCCCTTTTTTTTTAGAACAACTTGATGATTTCATGAATAGTTGCACGTTT
TTATCGCACAAAATTGCTAACAATCTTAATAAATAAATATTCAAAGCAAA
GCTGCTGAGAACTAACACTGCATAGATAGATTCGGTTATGACACTTCGGT
ATTCAAAAACTATTGGCAAAGCTGCTCAACTGCTGTCACAATCTGGGCAG
GTTGAACCACAGTCCATTCCTCCAACGTGCCGGCATATGGAGTTGGCACG
TCCTGTGATGATAAGCATACAATAGGAGCATCCAAGTAATCATGGAAATT
CTCAGTGATAGCTGCAGTTAAACTAGCACCAATTCCACCAGTCCGCATGC
ACTCCTCCACAATCAGTACACGATGTGTCTTTTTAATTGAATTTCCAATG
GTATAAAGATCAAATGGTTTCAATGACCTGATGTCAATAACCTCAGGATC
ATACCCTTTGTTTACCAAAGTTTTAGCAGCTTGCATCACATGATACCTCA
TTCGAGAATAGGTTAAAATAGTGACATGCTCCCCAGGCCTAACCATCTCA
GCTTCCTCAAGATTACAAATGTATTCCTCATCTGGAATCCTTTCCTTGAG
GTTGTAAAGCAACACATGCTCGAAAAGTATAACTGGGTTCTCACTTCGGA
TTGCAGCTTTCATCAAGCCCTTGGCATTGTATGGGGTCGAGCATGCCACC
ATTTGAATTCCGGGGATTGATTGAAAATATGACTCAAGGCGTTGGGAATG
CTCAGCTCCAAGTTGTCGGCCAACTCCACCAGGTCCACGGATAACTATTG
GTATGGTAAACTGCTCACCAGAAGTATAGTGGAGCCT
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