CV712184

Overview
NameCV712184
Unique NameCV712184
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712184 vs. ExPASy Swiss-Prot
Match: EIF3K_CAEEL (Eukaryotic translation initiation factor 3 subunit K OS=Caenorhabditis elegans GN=eif-3.K PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.560e-16
Identity = 58/204 (28.43%), Postives = 94/204 (46.08%), Query Frame = -1
Query:  309 MGREAQQQQQHXVSFTVEQLVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFW-----------------DEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGW 869
            M  E  Q++ H      E +  VN YNP+ + DL   V   V    Y  D  L +L+LYQ  PE+    +V ++L+K LM +P+ DF+L   LI        + + +  L   LE+  F  FW                     +   +++ + GFE A++ +A  V+S+T+QKI + +L+    L G + DK +     + GW
Sbjct:    1 MSFEKLQKELH------EAIEGVNRYNPENVADLAACVQAMVNENKYDKDIVLTILKLYQLNPEKYDEAVVRQVLLKTLMVLPSSDFALAKCLIDTNRLGSQELRRIFDLGAVLESCNFAVFWKLVKGAYKPTTNPNEPFKVPGEVPKMIKPMVGFEDAVKHYACRVISVTFQKIEKKMLS---RLLGGASDKEVTALAQSFGW 195          
BLAST of CV712184 vs. ExPASy Swiss-Prot
Match: EIF3K_NEUCR (Eukaryotic translation initiation factor 3 subunit K OS=Neurospora crassa GN=NCU09707 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.093e-15
Identity = 53/214 (24.77%), Postives = 97/214 (45.33%), Query Frame = -1
Query:  189 YNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIP---------ERVQMEDQFKTLIVLSHYLETGRFRHFW---DEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 794
            YNP+    LE Y+ +Q   +    +AN  LL+LYQ  P+R+  +++  IL+KA+   P+P F L L L+             ++ +    L  L+  LE   +  FW   D    + ++   + GFE  I+     ++  +Y++I   VL   + L   + +   +     CGW +EGD     ++ +P N  N    K  + + + ++   R+
Sbjct:   23 YNPEAAGTLEAYLTQQCEEKFCDCNANRALLKLYQLNPDRIKDEVITNILVKAMTQFPSPQFDLALHLLSPSQSNPGPNSSSELTEAVSKLRALNAQLEGAEYARFWATLDSDDLYADLTTDIAGFEDMIRVRIAQLVGQSYREIQFPVLESWLGLN--NSEATTQFITETCGWKVEGD-----VVQIPKNADNEAR-KAEIREDVNVDMFARV 228          
BLAST of CV712184 vs. ExPASy Swiss-Prot
Match: EIF3K_COCIM (Eukaryotic translation initiation factor 3 subunit K OS=Coccidioides immitis GN=CIMG_01880 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.017e-14
Identity = 58/215 (26.98%), Postives = 103/215 (47.91%), Query Frame = -1
Query:  249 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQ--------------------MEDQFKTLIVLSHYLETGRFRHFWDEAAK---HRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGL-SLDKFLEHQKANCGWILEGDQSTSQ---LIVLPPNEFN 812
            L  ++ YNP+     ++YV +Q   +T+   ANL LL+LYQF P  ++ + V  IL KAL   P+P FSL L L+P   Q                      +  + L  LS  LE+ ++  FW        + ++   V GFE+ I+      +   +++I   VL   ++++G+ +L+KF+      CGW ++  ++  +   ++ +P N+ N
Sbjct:   18 LNGLDRYNPETTAVFQDYVVQQCEDRTFDCYANLALLKLYQFNPPLLNAETVTNILAKALTVFPSPAFSLSLALLPAYTQPYATSSTQATTANLPMQTADFVEAVQKLTHLSTLLESAQYTAFWSTLNSDDLYADLTADVAGFEELIRIRIAVEVGKAFREIGADVLMGWLDMRGMETLEKFVVDV---CGWEVDKSKAEGENGVIVRVPRNKEN 229          
BLAST of CV712184 vs. ExPASy Swiss-Prot
Match: EIF3K_YARLI (Eukaryotic translation initiation factor 3 subunit K OS=Yarrowia lipolytica GN=YALI0D23243g PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.851e-14
Identity = 62/220 (28.18%), Postives = 102/220 (46.36%), Query Frame = -1
Query:  189 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQF--EPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERV-------QMEDQFKTLIVLSHYLETGRFRHFW---DEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 812
            L +++ YNP+ +  L+ Y   Q   Q   ++ANL LL+L QF  +P      I+  IL  AL      DF+  L ++P  V        + +  + L  L   L+  RF  FW   +    H +I   V  FE  ++      + ++ Q I + V    +N   LS +KF ++ K   GW +EG     + +V+PPN+ N  +      +SI +E I+R+
Sbjct:   19 LSSLDRYNPEKISILQEYATTQCADQHSDIEANLALLKLLQFQQQPNPNKEDIICNILSMALANFLTSDFTTALHVLPSYVLDSPAADTLAESIQKLFHLYTLLDGCRFPEFWAVYERDDAHADITADVADFENLVRISITRAVDISSQAIHKDVFRSWLN---LSDNKFADYVK-ELGWKVEG-----ETVVVPPNKENEAK-PATTTESIKIEQISRL 228          
BLAST of CV712184 vs. ExPASy Swiss-Prot
Match: EIF3K_CRYNE (Eukaryotic translation initiation factor 3 subunit K OS=Cryptococcus neoformans GN=CND02370 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.910e-12
Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = -1
Query:  495 EQLVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMA-MPAPDFSLCLFLIPERV----QMEDQFKTLIVLSHYLE-------TGRFRHFWDE 818
            E +  V+ YNP  LP +E+Y+  ++    Y L  NL +L+LYQF P+  +  ++  ILIKAL A +  PDF+LCL ++ E       +E   + L+++  YL+       T +F  FW E
Sbjct:   25 ELIHGVDRYNPSNLPFMEDYLATELKEGQYDLFGNLAILKLYQFNPQHSNPDVIINILIKALAATVSGPDFNLCLEMLREPSAILHDIESADEALVIVMPYLQRLHELSRTCQFTKFWQE 144          
The following BLAST results are available for this feature:
BLAST of CV712184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
EIF3K_CAEEL9.560e-1628.43Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_NEUCR8.093e-1524.77Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_COCIM4.017e-1426.98Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_YARLI6.851e-1428.18Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_CRYNE4.910e-1235.00Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A16_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712184 ID=CV712184; Name=CV712184; organism=Citrus sinensis; type=EST; length=872bp
TTGCAATAATAACATTGGTGTCTCATCAATTCCTCCAAGCCACTTGGGGC
TATGTTTTCAACATAAACACAAAAAGAGATTACAGCAGTCCCCAAAATTC
ACTGCAAGAGTGCTATAGCAGCTGGTTAAAACAAATGAAAATTTACCAAA
TGCCAGGATTTGAACTTCAATCAACCAAGAATGGGAAATATGCGGGTAAT
GTGTTCTAACGGGATGCTATCAGCAACATTCTTCTTCAGCTCGGGATGAT
TAAATTCATTAGGCGGCAGGACAATCAATTGGCTCGTACTTTGATCTCCT
TCAAGAATCCAGCCACAATTGGCCTTCTGGTGTTCAAGGAATTTGTCCAG
AGATAGACCTTTAAGATTGATAGCCTCGGCAAGCACAGTCCTTGGAATCT
TTTGATATGTCAATGAAAGGACATGAATTGCAAAGGACTGAATTGCTTGC
TCAAAACCTGGCACGGCTTCAACTATGTTACGATGCTTAGCTGCTTCATC
CCAGAAATGGCGGAACCTTCCTGTCTCCAAGTAGTGAGAGAGGACAATCA
GCGTCTTGAATTGATCCTCCATTTGCACTCTTTCTGGGATCAAAAAGAGA
CAGAGACTGAAATCTGGAGCTGGCATTGCCATAAGAGCCTTAATTAAAAT
GCGGGCAACAATTTGGGTACTCATTCTTTCTGGTTCAAACTGATAAAGAC
GAAGAAGGCAAAGATTTGCATCCAGACTATATGTTTGTGACAAGACCTGC
TCGTTAACGTAGTTTTCGAGATCGGGAAGGATGTCGGGATTGTAGGGATT
GACGGCGACAAGCTGCTCCACTGTGAATGAAACCTNGTGCTGTTGCTGCT
GTTGAGCCTCTCTTCCCATTTT
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