CV712181
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_ORYSJ (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2) HSP 1 Score: 206.838 bits (525), Expect = 1.165e-52 Identity = 105/172 (61.05%), Postives = 129/172 (75.00%), Query Frame = 3 Query: 108 PISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSLVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 623 PIS P+ SG + ++H S F G S+ R + + + R+ + MA +P IQFIQGTDE T+PDV+LTKSRDG+NG+AIF+F +PSVFDSS E+GDITGFYMID+EG LQSVDVSAKFVNG+P+ IEAKY+MR+PREWDRFMRFMERY+ NGLQFVKK Sbjct: 13 PISARAQPRRCPAGSSGGPSQSLHSS----FGGVSLQCRRTKPASLHRSRPSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQANGLQFVKK 180
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_ARATH (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana GN=PSB28 PE=1 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.521e-52 Identity = 108/169 (63.91%), Postives = 129/169 (76.33%), Query Frame = 3 Query: 126 HPQSRSPSLSGIV--TWAVHGSAQSPFNGQSVHMPRMRLSLVTRNSKVSG-PITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 623 H Q P SGIV + +V S F G V +PR + S T + ITM VKP +QFIQGTDE+T+PDVKLT+SRDGSNGMA+FSF +PSVFDSSGE+G+ITG YMIDEEG +QS DV+A+FVNG+P I AK+IMRSP+EWDRFMRFMERY++QNGLQFVKK Sbjct: 15 HSQRNVPR-SGIVLSSCSVLPIKSSSFTGSPVSLPRAQPSSRTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQFVKK 182
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_OSTTA (Photosystem II reaction center psb28 protein, chloroplastic OS=Ostreococcus tauri GN=psb28 PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 6.009e-33 Identity = 65/126 (51.59%), Postives = 95/126 (75.40%), Query Frame = 3 Query: 246 TRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 623 +++++ S + +IQF++G +E VP+V+LT+S+DGSNG A F FS+P VF++ GDITG ++ DEEG + +VDV+AKFVNG+P+ IEA+Y+M++ +W+RFMRFMERYA NGL F KK Sbjct: 24 SKSARRSVVVRAGTTTSIQFVKGQNETAVPEVRLTRSKDGSNGTAFFIFSDPDVFENGQ--GDITGMFLTDEEGEMSTVDVNAKFVNGKPTGIEARYVMKTEADWNRFMRFMERYAEDNGLGFSKK 147
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_ODOSI (Photosystem II reaction center psb28 protein OS=Odontella sinensis GN=psb28 PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.339e-32 Identity = 65/109 (59.63%), Postives = 84/109 (77.06%), Query Frame = 3 Query: 297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620 IQFI+G DE +PDV+LT+SRDGS G A F F P++ D S+ + G+ITG Y+ID+EGTL++ DV+A+F+NG+P IE+ YIM+SP WDRFMRFMERY NGL F K Sbjct: 5 IQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_PORYE (Photosystem II reaction center psb28 protein OS=Porphyra yezoensis GN=psb28 PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.133e-31 Identity = 64/110 (58.18%), Postives = 84/110 (76.36%), Query Frame = 3 Query: 294 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620 TIQFIQG +E VPDV+LT+SRDGS G A F F+ P + D+S + G+ITG Y++D EG + + DV+AKF+NG+P IEA ++++SP +WDRFMRFMERYA NGL F K Sbjct: 3 TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQIITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFMERYAQDNGLTFTK 112
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_PORPU (Photosystem II reaction center psb28 protein OS=Porphyra purpurea GN=psb28 PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.133e-31 Identity = 64/110 (58.18%), Postives = 84/110 (76.36%), Query Frame = 3 Query: 294 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620 TIQFIQG +E VPDV+LT+SRDGS G A F F+ P + D+S + G+ITG Y++D EG + + DV+AKF+NG+P IEA ++++SP +WDRFMRFMERYA NGL F K Sbjct: 3 TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQIITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFMERYAQDNGLTFTK 112
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_GUITH (Photosystem II reaction center psb28 protein OS=Guillardia theta GN=psb28 PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.133e-31 Identity = 65/109 (59.63%), Postives = 82/109 (75.23%), Query Frame = 3 Query: 297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620 IQFIQG +E +PDV+LT+SRDGS G A F F+ P V ++ + G+ITG Y+IDEEG L + DV+A+FVNG+P IEA YIM+S +WDRFMRFMERY+ NGL F K Sbjct: 4 IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQLVTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_PHATR (Photosystem II reaction center psb28 protein OS=Phaeodactylum tricornutum GN=psb28 PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.933e-31 Identity = 64/109 (58.72%), Postives = 83/109 (76.15%), Query Frame = 3 Query: 297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620 IQFI+G DE +PDV+LT+S+DGS G A F F P++ D ++ + G+ITG Y+IDEEG L++ DV+A+FVNG+P IE+ YIM+SP WDRFMRFMERY NGL F K Sbjct: 5 IQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDEEGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_THAPS (Photosystem II reaction center psb28 protein OS=Thalassiosira pseudonana GN=psb28 PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 4.307e-31 Identity = 65/109 (59.63%), Postives = 81/109 (74.31%), Query Frame = 3 Query: 297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620 IQFI+G DE +PDV+LT+SRDGS G A F F ++ + S + G+ITG YMIDEEG L++ DVSA+FVNG+P +E+ YIM+SP WDRFMRFMERY NGL F K Sbjct: 5 IQFIKGIDEKVLPDVRLTRSRDGSTGTATFLFKNANLINKSLALNGEITGMYMIDEEGILETRDVSARFVNGKPQAVESIYIMKSPEAWDRFMRFMERYGESNGLAFTK 113
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_GRATL (Photosystem II reaction center psb28 protein OS=Gracilaria tenuistipitata var. liui GN=psb28 PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 5.625e-31 Identity = 65/109 (59.63%), Postives = 81/109 (74.31%), Query Frame = 3 Query: 297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620 IQFI+G +E V DV LT+SRDGS G A F F+ P + S E GDITG Y+ D+EG L + DVSAKF+NG+P +EA YI++SP+EWDRFMRFME+YAN+N L F K Sbjct: 4 IQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILKSGMEDKGDITGMYLKDDEGELMTRDVSAKFINGKPQAVEAIYIIKSPQEWDRFMRFMEKYANENKLSFTK 112 The following BLAST results are available for this feature:
BLAST of CV712181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712181 ID=CV712181; Name=CV712181; organism=Citrus sinensis; type=EST; length=821bpback to top |