CV712181
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_ANASP (Photosystem II reaction center psb28 protein OS=Anabaena sp. (strain PCC 7120) GN=psb28 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.927e-27 Identity = 57/108 (52.78%), Postives = 76/108 (70.37%), Query Frame = 3 Query: 297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620 IQF +G DE +P+V+LT+SR G G A F F+ P + D G DITG Y+IDEEG + + +V KF+NGRP +EA Y+M+S +EW+RF+RFMERYA +N L F K Sbjct: 4 IQFSRGLDEEVIPEVRLTRSRTGDTGTATFIFTNPKILDQ-GTTEDITGMYLIDEEGEIITREVKGKFINGRPEGLEAVYVMKSAQEWERFIRFMERYAQENDLGFSK 110
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_CYACA (Photosystem II reaction center psb28 protein OS=Cyanidium caldarium GN=psb28 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.098e-26 Identity = 57/111 (51.35%), Postives = 78/111 (70.27%), Query Frame = 3 Query: 297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF---DSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620 IQFI+G DE TVP+++LT+SRDG+ G AIFSF P+VF SS G+ITG Y+ D+EG L + +V+A FVNG+P +EA Y++R+ WDR MRF+ +YA + F K Sbjct: 4 IQFIKGIDEQTVPEIRLTRSRDGNTGTAIFSFINPTVFLLHSSSQNYGEITGMYLQDDEGELSTRNVTANFVNGKPKAVEAVYLIRNKSGWDRLMRFINKYAEDKNMSFYK 114
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_CYAA5 (Photosystem II reaction center psb28 protein OS=Cyanothece sp. (strain ATCC 51142) GN=psb28 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.194e-26 Identity = 55/108 (50.93%), Postives = 76/108 (70.37%), Query Frame = 3 Query: 297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620 IQF +G E VP+V+LT+++ G++G A F F P++ D+ DITG Y++DEEG + + +V KF+NG+P+ +EA IM S EWDRFMRFMERYA +NGL F K Sbjct: 4 IQFSRGVSEPVVPEVRLTRAKSGNSGTATFRFESPTILDAEST-DDITGMYLVDEEGEIVTREVKGKFINGKPTSVEAILIMNSQDEWDRFMRFMERYAQENGLGFSK 110
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_PROM4 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9211) GN=psb28 PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 5.448e-26 Identity = 54/113 (47.79%), Postives = 77/113 (68.14%), Query Frame = 3 Query: 285 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 623 + P IQF +G DE +P+++LT+S+DG G AIF F +P S GDITG +ID+EG L++ +V A+F+NG PS IEA Y ++ +++RFMRF ERYA +NGL + K Sbjct: 6 INPAIQFYEGVDETAIPEIRLTRSKDGKTGQAIFVFQKPDAL-SEATTGDITGMTLIDDEGALKTREVKARFLNGEPSAIEATYTWKTESDFERFMRFAERYAKKNGLGYSSK 117
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_SYNY3 (Photosystem II reaction center psb28 protein OS=Synechocystis sp. (strain PCC 6803) GN=psb28 PE=1 SV=3) HSP 1 Score: 116.701 bits (291), Expect = 1.585e-25 Identity = 57/108 (52.78%), Postives = 76/108 (70.37%), Query Frame = 3 Query: 297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620 IQF +G E VP+V+L+KS++G +GMA F F EP++ + DITG Y+ID+EG + + +V KF+NGRP+ IEA I+ S EWDRFMRFMERY +NGL F K Sbjct: 4 IQFSKGVAETVVPEVRLSKSKNGQSGMAKFYFLEPTIL-AKESTDDITGMYLIDDEGEIITREVKGKFINGRPTAIEATVILNSQPEWDRFMRFMERYGAENGLGFSK 110
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_MICAN (Photosystem II reaction center psb28 protein OS=Microcystis aeruginosa (strain NIES-843) GN=psb28 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.531e-25 Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = 3 Query: 297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620 IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y+IDEEG + + V KF+NG+P IEA I SP EWDRFMRFMERY ++NGL+F K Sbjct: 4 IQFSKGLKEPVVPDIRLSRTKTGEKGSAEFYFKQPTILGDQ-QTEEITGMYLIDEEGEIVTTKVKGKFINGKPMAIEATVIFNSPAEWDRFMRFMERYGSENGLEFTK 110
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_CYAP7 (Photosystem II reaction center psb28 protein OS=Cyanothece sp. (strain PCC 7424) GN=psb28 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.531e-25 Identity = 54/108 (50.00%), Postives = 75/108 (69.44%), Query Frame = 3 Query: 297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620 IQF +G E +P ++LT+SR G +G A F F P++F + + ++TG Y+ID EG + S +V KF+NG+P IEA IM SP EW+RFMRFMERYA ++GL+F K Sbjct: 4 IQFARGLVEDAIPTIRLTRSRTGDSGTATFYFESPNIF-ADEQTQEVTGMYLIDSEGEIVSREVKGKFINGKPHAIEAILIMNSPDEWERFMRFMERYAQEHGLEFTK 110
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_TRIEI (Photosystem II reaction center psb28 protein OS=Trichodesmium erythraeum (strain IMS101) GN=psb28 PE=3 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 4.612e-25 Identity = 56/109 (51.38%), Postives = 73/109 (66.97%), Query Frame = 3 Query: 294 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620 TIQFIQG DE P+V+LT+SR G+ G A F +P +ITG YMIDEEG + S DV A+FVNG+P +E Y+M++ +EW+RFMRFME YA ++ L F K Sbjct: 3 TIQFIQGIDEEVTPEVRLTRSRSGNQGTATLIFEDPKALGQD-VTQEITGMYMIDEEGQITSRDVKARFVNGQPKFLEGLYVMKTKQEWERFMRFMESYAKEHDLGFKK 110
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_SYNPW (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain WH7803) GN=psb28 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.289e-24 Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 3 Query: 288 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 614 K IQF +GTDE VPD++LT+SRDG G A F F +P + +G+I G +M+DEEG L + +V+ KFVNG+PS +EA Y ++ ++++RFMRF ERYA GL + Sbjct: 6 KAAIQFFRGTDEPVVPDIRLTRSRDGRTGQATFIFEQPEAL-APETLGNIAGMWMVDEEGELVTREVNGKFVNGKPSALEATYTWKTEQDFERFMRFAERYAETKGLGY 113
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_PROMA (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus GN=psb28 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.289e-24 Identity = 52/110 (47.27%), Postives = 78/110 (70.91%), Query Frame = 3 Query: 294 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 623 TI+F++G DE ++P+++LT+SRDG G A F+F EP S+ + G I G M DEEG L++ +V A+FVNG PS +EA Y+ +S ++ RFMRF +RYA+ NG+ + +K Sbjct: 9 TIRFLEGIDETSIPEIRLTRSRDGRTGQAFFTFEEPQAL-SAVKDGSIQGMSMFDEEGELKTREVKARFVNGTPSALEATYVWKSESDFQRFMRFAKRYASSNGMGYSEK 117 The following BLAST results are available for this feature:
BLAST of CV712181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712181 ID=CV712181; Name=CV712181; organism=Citrus sinensis; type=EST; length=821bpback to top |