CV712181

Overview
NameCV712181
Unique NameCV712181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_ANASP (Photosystem II reaction center psb28 protein OS=Anabaena sp. (strain PCC 7120) GN=psb28 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.927e-27
Identity = 57/108 (52.78%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620
            IQF +G DE  +P+V+LT+SR G  G A F F+ P + D  G   DITG Y+IDEEG + + +V  KF+NGRP  +EA Y+M+S +EW+RF+RFMERYA +N L F K
Sbjct:    4 IQFSRGLDEEVIPEVRLTRSRTGDTGTATFIFTNPKILDQ-GTTEDITGMYLIDEEGEIITREVKGKFINGRPEGLEAVYVMKSAQEWERFIRFMERYAQENDLGFSK 110          
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_CYACA (Photosystem II reaction center psb28 protein OS=Cyanidium caldarium GN=psb28 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.098e-26
Identity = 57/111 (51.35%), Postives = 78/111 (70.27%), Query Frame = 3
Query:  297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF---DSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620
            IQFI+G DE TVP+++LT+SRDG+ G AIFSF  P+VF    SS   G+ITG Y+ D+EG L + +V+A FVNG+P  +EA Y++R+   WDR MRF+ +YA    + F K
Sbjct:    4 IQFIKGIDEQTVPEIRLTRSRDGNTGTAIFSFINPTVFLLHSSSQNYGEITGMYLQDDEGELSTRNVTANFVNGKPKAVEAVYLIRNKSGWDRLMRFINKYAEDKNMSFYK 114          
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_CYAA5 (Photosystem II reaction center psb28 protein OS=Cyanothece sp. (strain ATCC 51142) GN=psb28 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.194e-26
Identity = 55/108 (50.93%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620
            IQF +G  E  VP+V+LT+++ G++G A F F  P++ D+     DITG Y++DEEG + + +V  KF+NG+P+ +EA  IM S  EWDRFMRFMERYA +NGL F K
Sbjct:    4 IQFSRGVSEPVVPEVRLTRAKSGNSGTATFRFESPTILDAEST-DDITGMYLVDEEGEIVTREVKGKFINGKPTSVEAILIMNSQDEWDRFMRFMERYAQENGLGFSK 110          
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_PROM4 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9211) GN=psb28 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.448e-26
Identity = 54/113 (47.79%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  285 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 623
            + P IQF +G DE  +P+++LT+S+DG  G AIF F +P    S    GDITG  +ID+EG L++ +V A+F+NG PS IEA Y  ++  +++RFMRF ERYA +NGL +  K
Sbjct:    6 INPAIQFYEGVDETAIPEIRLTRSKDGKTGQAIFVFQKPDAL-SEATTGDITGMTLIDDEGALKTREVKARFLNGEPSAIEATYTWKTESDFERFMRFAERYAKKNGLGYSSK 117          
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_SYNY3 (Photosystem II reaction center psb28 protein OS=Synechocystis sp. (strain PCC 6803) GN=psb28 PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 1.585e-25
Identity = 57/108 (52.78%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620
            IQF +G  E  VP+V+L+KS++G +GMA F F EP++  +     DITG Y+ID+EG + + +V  KF+NGRP+ IEA  I+ S  EWDRFMRFMERY  +NGL F K
Sbjct:    4 IQFSKGVAETVVPEVRLSKSKNGQSGMAKFYFLEPTIL-AKESTDDITGMYLIDDEGEIITREVKGKFINGRPTAIEATVILNSQPEWDRFMRFMERYGAENGLGFSK 110          
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_MICAN (Photosystem II reaction center psb28 protein OS=Microcystis aeruginosa (strain NIES-843) GN=psb28 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.531e-25
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = 3
Query:  297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620
            IQF +G  E  VPD++L++++ G  G A F F +P++     +  +ITG Y+IDEEG + +  V  KF+NG+P  IEA  I  SP EWDRFMRFMERY ++NGL+F K
Sbjct:    4 IQFSKGLKEPVVPDIRLSRTKTGEKGSAEFYFKQPTILGDQ-QTEEITGMYLIDEEGEIVTTKVKGKFINGKPMAIEATVIFNSPAEWDRFMRFMERYGSENGLEFTK 110          
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_CYAP7 (Photosystem II reaction center psb28 protein OS=Cyanothece sp. (strain PCC 7424) GN=psb28 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.531e-25
Identity = 54/108 (50.00%), Postives = 75/108 (69.44%), Query Frame = 3
Query:  297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620
            IQF +G  E  +P ++LT+SR G +G A F F  P++F +  +  ++TG Y+ID EG + S +V  KF+NG+P  IEA  IM SP EW+RFMRFMERYA ++GL+F K
Sbjct:    4 IQFARGLVEDAIPTIRLTRSRTGDSGTATFYFESPNIF-ADEQTQEVTGMYLIDSEGEIVSREVKGKFINGKPHAIEAILIMNSPDEWERFMRFMERYAQEHGLEFTK 110          
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_TRIEI (Photosystem II reaction center psb28 protein OS=Trichodesmium erythraeum (strain IMS101) GN=psb28 PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.612e-25
Identity = 56/109 (51.38%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  294 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 620
            TIQFIQG DE   P+V+LT+SR G+ G A   F +P          +ITG YMIDEEG + S DV A+FVNG+P  +E  Y+M++ +EW+RFMRFME YA ++ L F K
Sbjct:    3 TIQFIQGIDEEVTPEVRLTRSRSGNQGTATLIFEDPKALGQD-VTQEITGMYMIDEEGQITSRDVKARFVNGQPKFLEGLYVMKTKQEWERFMRFMESYAKEHDLGFKK 110          
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_SYNPW (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain WH7803) GN=psb28 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.289e-24
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 3
Query:  288 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 614
            K  IQF +GTDE  VPD++LT+SRDG  G A F F +P    +   +G+I G +M+DEEG L + +V+ KFVNG+PS +EA Y  ++ ++++RFMRF ERYA   GL +
Sbjct:    6 KAAIQFFRGTDEPVVPDIRLTRSRDGRTGQATFIFEQPEAL-APETLGNIAGMWMVDEEGELVTREVNGKFVNGKPSALEATYTWKTEQDFERFMRFAERYAETKGLGY 113          
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_PROMA (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus GN=psb28 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.289e-24
Identity = 52/110 (47.27%), Postives = 78/110 (70.91%), Query Frame = 3
Query:  294 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 623
            TI+F++G DE ++P+++LT+SRDG  G A F+F EP    S+ + G I G  M DEEG L++ +V A+FVNG PS +EA Y+ +S  ++ RFMRF +RYA+ NG+ + +K
Sbjct:    9 TIRFLEGIDETSIPEIRLTRSRDGRTGQAFFTFEEPQAL-SAVKDGSIQGMSMFDEEGELKTREVKARFVNGTPSALEATYVWKSESDFQRFMRFAKRYASSNGMGYSEK 117          
The following BLAST results are available for this feature:
BLAST of CV712181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PSB28_ANASP4.927e-2752.78Photosystem II reaction center psb28 protein OS=An... [more]
PSB28_CYACA1.098e-2651.35Photosystem II reaction center psb28 protein OS=Cy... [more]
PSB28_CYAA53.194e-2650.93Photosystem II reaction center psb28 protein OS=Cy... [more]
PSB28_PROM45.448e-2647.79Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_SYNY31.585e-2552.78Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_MICAN3.531e-2549.07Photosystem II reaction center psb28 protein OS=Mi... [more]
PSB28_CYAP73.531e-2550.00Photosystem II reaction center psb28 protein OS=Cy... [more]
PSB28_TRIEI4.612e-2551.38Photosystem II reaction center psb28 protein OS=Tr... [more]
PSB28_SYNPW2.289e-2448.62Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_PROMA2.289e-2447.27Photosystem II reaction center psb28 protein OS=Pr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A14_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712181 ID=CV712181; Name=CV712181; organism=Citrus sinensis; type=EST; length=821bp
CCTAACTCTCTCTCTCTCTCTTTGGCTACCTCCTTCTTTCTCCGACTCCG
TCTCTGCTTCAGTGTCTTTGTGCAATGGCAGCTCTGCGGTCTCTTGCATT
AGCCTCTCCAATCTCACACTGTTGGCACCCACAATCCCGCTCTCCCTCTC
TCTCTGGTATTGTAACATGGGCTGTGCATGGAAGTGCACAATCACCATTC
AACGGCCAATCTGTACATATGCCTCGTATGCGTTTGTCCCTGGTAACACG
AAATTCTAAGGTATCTGGACCCATAACGATGGCGGTGAAACCAACAATTC
AGTTCATCCAAGGAACTGATGAATTGACAGTTCCGGATGTGAAGCTAACA
AAATCAAGAGATGGTTCAAACGGTATGGCCATATTCAGTTTTAGTGAACC
CTCCGTTTTTGACTCGTCCGGTGAAATTGGTGATATCACCGGATTTTACA
TGATTGATGAGGAGGGAACTCTTCAATCAGTTGATGTAAGTGCCAAATTT
GTCAATGGGAGACCTTCTAGGATTGAAGCAAAGTATATCATGCGGTCTCC
CCGAGAGTGGGATAGGTTCATGAGGTTCATGGAGCGGTATGCTAATCAGA
ATGGCTTGCAATTTGTCAAGAAATGAGGCATTTTTTTTCTTCTCCTTGCT
TTGCTTTACCCTATTAAATCTTTGGTTTTGTGTAATTTGGTCAGGCAAAT
GGTGAAGGCTTTGCTTGACAGCCATTTAAGTTTGATGCAAAAACCTTTAT
GCTCTCTTCTCTTCAACATATTTTTGCTGCTGCTACTGATGTTCGATTTT
CTTCCCTTCATTATGTACATG
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