CV712181

Overview
NameCV712181
Unique NameCV712181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712181_ssr6 microsatellite CV712181_ssr6:6..21. BLAST: Citrus ESTs to Prunus persica proteins V1
CV712181_ssr146 microsatellite CV712181_ssr146:146..155. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2912 contig Csv1_Contig2912:1..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_PROMS (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain AS9601) GN=psb28 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.773e-22
Identity = 51/109 (46.79%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 623
            IQF +GTDE  VP+++LT+S+DG+ G A+F F +P    S  + G+ITG  MID EG + + +V  KFV+G P  +EA YI ++  ++DRFMRF   YA  NGL + +K
Sbjct:    9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDTEGEILTREVKVKFVDGEPIFLEAVYIWKNTPDFDRFMRFANSYAKSNGLGYSEK 116          
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_PROMP (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=psb28 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.063e-21
Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 623
            IQF +GTDE  VP+++LT+  DG+ G AIF F +P    S  + G+ITG  MID EG + + +V  KFV+G P  +E  YI ++  ++DRFMRF   YA  NGL + +K
Sbjct:    9 IQFYEGTDEPVVPEIRLTRGNDGTTGQAIFIFEKPQALSSVAD-GEITGMRMIDAEGEILTREVKVKFVDGEPMFLEGTYIWKTKSDFDRFMRFANSYAKSNGLGYSEK 116          
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_PROM5 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9515) GN=psb28 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.063e-21
Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  297 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 623
            IQF +GT+E  VP+++LT+  DG+ G AIF F +P    S  E G+ITG  MID EG + + +V  KFV+G P  +E  YI ++  ++DRFMRF   YA  NGL + +K
Sbjct:    9 IQFYEGTNEPVVPEIRLTRGNDGTTGQAIFIFEKPQALSSITE-GEITGMRMIDSEGEIMTREVKVKFVDGEPMYLEGTYIWKTKSDFDRFMRFANSYAKSNGLGYSEK 116          
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_SYNJB (Photosystem II reaction center psb28 protein OS=Synechococcus sp. GN=psb28 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.663e-14
Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  294 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERY--ANQNGL 608
            +I+F  G  E+    V++ KS+ G+ G AIF F      D   +  +I G  MIDEEG L + ++ AKF+NG    +E  Y M +  EWDRF+RFMER+  ANQ G+
Sbjct:    3 SIEFSPGIQEVPT-QVRVLKSKTGNRGSAIFRFE-----DLKSDTQNILGMRMIDEEGELTTRNIRAKFLNGEFKALEVTYDMETEAEWDRFLRFMERFSAANQMGM 103          
BLAST of CV712181 vs. ExPASy Swiss-Prot
Match: PSB28_SYNJA (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain JA-3-3Ab) GN=psb28 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14
Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  294 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERY--ANQNGL 608
            TI+F  G  E+    V+L KS+ G  G AIF F E        +   I G  MIDEEG L + ++ AKF+NG    +E  Y M +  EW+RF+RFMER+  ANQ G+
Sbjct:    3 TIEFSPGIPEVPT-QVRLLKSKTGKRGSAIFRFEE-----LKSDTQSILGMRMIDEEGELTTRNIKAKFLNGEFKALEVIYDMETEAEWERFLRFMERFSAANQMGM 103          
The following BLAST results are available for this feature:
BLAST of CV712181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PSB28_PROMS4.773e-2246.79Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_PROMP1.063e-2145.87Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_PROM51.063e-2145.87Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_SYNJB3.663e-1442.06Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_SYNJA6.248e-1442.99Photosystem II reaction center psb28 protein OS=Sy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A14_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712181 ID=CV712181; Name=CV712181; organism=Citrus sinensis; type=EST; length=821bp
CCTAACTCTCTCTCTCTCTCTTTGGCTACCTCCTTCTTTCTCCGACTCCG
TCTCTGCTTCAGTGTCTTTGTGCAATGGCAGCTCTGCGGTCTCTTGCATT
AGCCTCTCCAATCTCACACTGTTGGCACCCACAATCCCGCTCTCCCTCTC
TCTCTGGTATTGTAACATGGGCTGTGCATGGAAGTGCACAATCACCATTC
AACGGCCAATCTGTACATATGCCTCGTATGCGTTTGTCCCTGGTAACACG
AAATTCTAAGGTATCTGGACCCATAACGATGGCGGTGAAACCAACAATTC
AGTTCATCCAAGGAACTGATGAATTGACAGTTCCGGATGTGAAGCTAACA
AAATCAAGAGATGGTTCAAACGGTATGGCCATATTCAGTTTTAGTGAACC
CTCCGTTTTTGACTCGTCCGGTGAAATTGGTGATATCACCGGATTTTACA
TGATTGATGAGGAGGGAACTCTTCAATCAGTTGATGTAAGTGCCAAATTT
GTCAATGGGAGACCTTCTAGGATTGAAGCAAAGTATATCATGCGGTCTCC
CCGAGAGTGGGATAGGTTCATGAGGTTCATGGAGCGGTATGCTAATCAGA
ATGGCTTGCAATTTGTCAAGAAATGAGGCATTTTTTTTCTTCTCCTTGCT
TTGCTTTACCCTATTAAATCTTTGGTTTTGTGTAATTTGGTCAGGCAAAT
GGTGAAGGCTTTGCTTGACAGCCATTTAAGTTTGATGCAAAAACCTTTAT
GCTCTCTTCTCTTCAACATATTTTTGCTGCTGCTACTGATGTTCGATTTT
CTTCCCTTCATTATGTACATG
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