CV712172

Overview
NameCV712172
Unique NameCV712172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.687e-23
Identity = 53/110 (48.18%), Postives = 70/110 (63.64%), Query Frame = 1
Query:  103 NRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            N  +V+  KGPW+ EED  L   +  HG   W+ I++S    R+GKSCRLRW N L P V     TPEE  +I+  HA++GN+W+ IA+ L GRTDN IKN+WN T  +K
Sbjct:    7 NSHDVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQK 116          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.204e-23
Identity = 51/120 (42.50%), Postives = 74/120 (61.67%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISK-SIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSM---LTENGIFLNCN 474
            KGPW+ +ED  L   V   G R W  I+K S   R+GKSCRLRW N L P ++    TP+E+ +++  HA++GN+W+ IAR L GRTDN IKN+W + +++K       ++    F NC+
Sbjct:    9 KGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKKRPVSPTSSFSNCS 128          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.204e-23
Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 1
Query:   94 MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            M  + +E +  KG W+ EED+ L   V+ HG  +W+ I+K     R GKSCRLRW N LSP V    FT +E+++IIR H   GN+W+ IA+ + GRTDN +KN+WN+ L +K
Sbjct:    3 MTRDGKEHEYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 115          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.878e-23
Identity = 50/102 (49.02%), Postives = 69/102 (67.65%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            KG W+ EED+ L   V+ HG  +W+ I+K     R GKSCRLRW N LSP V+   FT +E+++IIR H   GN+W+ IA+ + GRTDN +KN+WN+ L +K
Sbjct:   18 KGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 119          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.878e-23
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISK-SIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 438
            +G W PEED  L+  V+ HG  NW+ IS+ S   R GKSCRLRW N L P ++  + +P+E ++IIR H   GN+W+ IA  L GRTDN +KN+WN+ L +K +S
Sbjct:   14 RGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNS 118          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.878e-23
Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 438
            KG W+ EED+ L   ++ HG   W  + K+    R GKSCRLRW N L P ++   FT EEDE+II+ H+  GNKW+ IA  L GRTDN IKN+WN+ +KRK  S
Sbjct:   14 KGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVS 118          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.759e-23
Identity = 52/102 (50.98%), Postives = 67/102 (65.69%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            KG W+ EEDE L   ++ HG   W  + K+    R GKSCRLRW N L P ++   FT EEDE+II+ H+  GNKW+ IA  L GRTDN IKN+WN+ ++RK
Sbjct:   14 KGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK 115          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.909e-23
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 438
            KG W+ EED+ L   ++ HG   W  + KS    R GKSCRLRW N L P ++   FT +ED++II+ H+  GNKW+ IA  L GRTDN IKN+WN+ +KRK  S
Sbjct:   14 KGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLS 118          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.411e-23
Identity = 53/103 (51.46%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPR-NW-SLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            +GPWSPEED  L+  ++K G   NW +L  K+   R GKSCRLRW N L P + H  FT EED +I    A  G++W+ IA  L GRTDN IKN+WN+ LK+K
Sbjct:   14 RGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKK 116          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.411e-23
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 438
            KG W+ EED+ L   ++ HG   W  + K+    R GKSCRLRW N L P ++   FT EEDE+II+ H+  GNKW+ IA  L GRTDN IKN+WN+ ++RK  S
Sbjct:   14 KGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLS 118          
The following BLAST results are available for this feature:
BLAST of CV712172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB40_ANTMA1.687e-2348.18Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB48_ARATH2.204e-2342.50Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYB23_ARATH2.204e-2346.02Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
WER_ARATH2.878e-2349.02Transcription factor WER OS=Arabidopsis thaliana G... [more]
MYB82_ARATH2.878e-2348.57Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
MYB30_ANTMA2.878e-2350.48Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB4_ARATH3.759e-2350.98Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB6_ARATH4.909e-2349.52Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
RAX2_ARATH6.411e-2351.46Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]
MYB08_ANTMA6.411e-2349.52Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A09_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712172 ID=CV712172; Name=CV712172; organism=Citrus sinensis; type=EST; length=754bp
AAAAGAACCACCTCTCTCGAAGCTAAAAACTGAAATTCTCTTGCATGATC
AACACCCATTCATTGAAGTTAAATTATTTTTAATTGTTCATTAATGGCGT
TTAATAGAAGAGAAGTGGATCGGATCAAAGGTCCATGGAGCCCCGAAGAA
GACGAAGCCTTACAGCAGCTGGTTCAAAAACACGGCCCAAGAAATTGGTC
TCTAATCAGCAAATCAATTCCCGGAAGATCGGGAAAGTCTTGCCGGCTAC
GGTGGTGCAACCAGCTGTCACCTCAAGTCGAGCACCGAGCGTTCACGCCC
GAAGAAGACGAGATGATCATACGAGCCCACGCTCGGTTTGGCAACAAGTG
GGCCACCATCGCGCGCCTTCTCAACGGCCGAACCGATAACGCGATTAAGA
ATCACTGGAACTCGACCTTAAAACGTAAGTGCTCTTCGATGTTGACAGAG
AACGGTATTTTTTTGAATTGTAATGGATACGATGCGGATTTTGGGAATAG
TATTCAGCAACAGCCGTTGAAATTGAAAAGATCGGTGAGTGCGGGATCGA
GTGTGCCCGTGACCACGGGACTTTATATGAGCCCCGGTAGTCCATCGGGA
TCCGACGTCAGCGATTCAAGCGTGCCGGGTTTGTCATCGAATTACAATAT
ATACAAACCCGTGGCGAGATCTGGCGGTATCAATGTGGACGTGAATGTGG
TGCCCGAGCCGGAAACGACGTCGTCGTCTAATGACCCTCCTACTTCATTG
AGTC
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