CV712172

Overview
NameCV712172
Unique NameCV712172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:32..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.156e-22
Identity = 48/112 (42.86%), Postives = 70/112 (62.50%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGI 459
            +G W+ EED+ L   +Q +G  +W  + K+    R GKSCRLRW N L   ++    TPEE+E++++ H+  GN+W+ IA  L GRTDN IKN+WNS L RK  + + +  I
Sbjct:   14 RGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRKLHNFIRKPSI 125          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.427e-22
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            +G W+ EEDE L   ++ HG   W  + K+    R GKSCRLRW N L P ++   FT +ED++I++ H+  GNKW+ IA  L GRTDN IKN+WN+ ++RK
Sbjct:   14 RGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRK 115          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.088e-22
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNW-SLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            +GPW+ EEDE L   ++K G   W SL  ++   R GKSCRLRW N L P V+    T +E+++I+R H   GN+W+ IA  + GRTDN IKN+WN+ L++K
Sbjct:   25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK 126          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 9.258e-22
Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISK-SIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            KG WSPEEDE L   + +HG   WS + + +   R GKSCRLRW N L P ++   F+ +E++ I+  H   GN+W+ IA  L GRTDN IKN WNS +K+K
Sbjct:   16 KGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKK 117          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.209e-21
Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPR-NWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            KGPWSPEED  L+  ++  G   NW  + + I   R GKSCRLRW N L P ++H  F+ EE+ +I   +   G++W+ IA  L GRTDN IKN+WN+ LK+K
Sbjct:   14 KGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 52/119 (43.70%), Postives = 73/119 (61.34%), Query Frame = 1
Query:  112 EVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR--KCSSMLTENGI 459
            E +  KGPW+ EED  L   +  HG   W+ ++KS    R+GKSCRLRW N L P V     TPEE  +I+  HA++GN+W+ IA+ L GRTDN IKN W + +++  K S + T + +
Sbjct:   17 EAEVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYIKQSDVTTTSSV 135          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.694e-21
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            +GPW+ EED+ L   V K+G + W +I K     R GKSCRLRW N L P ++    T  E+  II  HA  GN+W+ IA  + GRTDN IKN+WN+ +K+K
Sbjct:   14 RGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAGLSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKK 115          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.518e-21
Identity = 50/116 (43.10%), Postives = 69/116 (59.48%), Query Frame = 1
Query:  106 RREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTE 450
            R E++R  G W+  ED+ L+  +  HG   WS +       R GKSCRLRW N L P ++    + +E+E+IIR H   GN+W+ IA  L GRTDN IKNHWNS L+++     T+
Sbjct:   11 REELNR--GAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRLPKTQTK 124          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21
Identity = 48/105 (45.71%), Postives = 66/105 (62.86%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLI-SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 438
            +G W+ +ED+AL   V+ HG   W  +  K+   R GKSCRLRW N L P +     + +E+++IIR H   GN+W+ IA  L GRTDN IKN+WNSTL R+  +
Sbjct:   14 RGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRRAGA 118          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.001e-21
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG--RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSM 441
            KGPW+ EED+ L   +  +G   W  + K + G  R GKSCRLRW N L P ++    +  E++++I  H+R GN+W+ IA  L GRTDN IKNHWN+ +K+K   M
Sbjct:   14 KGPWTAEEDKKLISFILTNGQCCWRAVPK-LAGLKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKM 119          
The following BLAST results are available for this feature:
BLAST of CV712172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB12_ARATH4.156e-2242.86Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
MYB38_MAIZE5.427e-2247.06Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB5_ARATH7.088e-2247.06Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYB3_HORVU9.258e-2248.04Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
RAX3_ARATH1.209e-2147.57Transcription factor RAX3 OS=Arabidopsis thaliana ... [more]
MYB21_ARATH1.579e-2143.70Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYB15_ANTMA2.694e-2147.06Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]
TT2_ARATH3.518e-2143.10Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
MYBC_MAIZE4.595e-2145.71Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
ODO1_PETHY6.001e-2144.86Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001A09_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712172 ID=CV712172; Name=CV712172; organism=Citrus sinensis; type=EST; length=754bp
AAAAGAACCACCTCTCTCGAAGCTAAAAACTGAAATTCTCTTGCATGATC
AACACCCATTCATTGAAGTTAAATTATTTTTAATTGTTCATTAATGGCGT
TTAATAGAAGAGAAGTGGATCGGATCAAAGGTCCATGGAGCCCCGAAGAA
GACGAAGCCTTACAGCAGCTGGTTCAAAAACACGGCCCAAGAAATTGGTC
TCTAATCAGCAAATCAATTCCCGGAAGATCGGGAAAGTCTTGCCGGCTAC
GGTGGTGCAACCAGCTGTCACCTCAAGTCGAGCACCGAGCGTTCACGCCC
GAAGAAGACGAGATGATCATACGAGCCCACGCTCGGTTTGGCAACAAGTG
GGCCACCATCGCGCGCCTTCTCAACGGCCGAACCGATAACGCGATTAAGA
ATCACTGGAACTCGACCTTAAAACGTAAGTGCTCTTCGATGTTGACAGAG
AACGGTATTTTTTTGAATTGTAATGGATACGATGCGGATTTTGGGAATAG
TATTCAGCAACAGCCGTTGAAATTGAAAAGATCGGTGAGTGCGGGATCGA
GTGTGCCCGTGACCACGGGACTTTATATGAGCCCCGGTAGTCCATCGGGA
TCCGACGTCAGCGATTCAAGCGTGCCGGGTTTGTCATCGAATTACAATAT
ATACAAACCCGTGGCGAGATCTGGCGGTATCAATGTGGACGTGAATGTGG
TGCCCGAGCCGGAAACGACGTCGTCGTCTAATGACCCTCCTACTTCATTG
AGTC
back to top