CV712172

Overview
NameCV712172
Unique NameCV712172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:32..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.280e-20
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            +G W+ EED+ L   + +HG  +W  + K+    R GKSCRLRW N L   V+    + EE+++II+ HA  GN+W+ IA  L GRTDN IKN+WNS L R+
Sbjct:   14 RGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQ 115          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20
Identity = 48/106 (45.28%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG--RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 438
            +GPW+ EED+ L   +  +G   W  I K + G  R GKSCRLRW N L P ++   F+  E+ +I+  HA  GN+W+ IA  L GRTDN IKN+WN+ LK++  S
Sbjct:   14 RGPWTSEEDQKLVSHITNNGLSCWRAIPK-LAGLLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRS 118          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB1_NEUCR (Myb-like DNA-binding protein myb-1 OS=Neurospora crassa GN=rca-1 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.930e-19
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  118 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            D+ +GPWS  ED+ L +LV+  GP NW  +++ +  R+ K CR RW   L P + H   T EE  +I+R     G +WA IAR L GR+DNA+KN+WN    RK
Sbjct:    6 DQRRGPWSAGEDQRLIKLVKDLGPGNWVNVARILGTRTPKQCRERWHQNLKPGLNHGPMTQEEAAIIVREVDLKGPRWADIARKLQGRSDNAVKNYWNGLNNRK 109          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.251e-18
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSG-----KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            KG W+ EED  L+Q + K+G   W      +P R+G     KSCRLRW N L P ++   F+ +E ++++R H   GN+W+ IA  L GRT N +KN+WN+ L +K
Sbjct:   10 KGAWTAEEDSLLRQCIGKYGEGKWH----QVPLRAGLNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.251e-18
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSG-----KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 426
            K  W PEED  L+  V ++G R W+     +P R+G      SCR RW N L P ++   FT EE++ +++ HA  GNKW+ +AR   GRTDN IKN WN+   R
Sbjct:   18 KSKWKPEEDRILKDYVIQYGDRTWT----HVPKRTGLPHNPASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFWNARRMR 118          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.787e-18
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSG-----KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            KG W+ EED  L+Q + K+G   W      +P R+G     KSCRLRW N L P ++    + +E ++++R H   GN+W+ IA  L GRT N +KN+WN+ L +K
Sbjct:   10 KGAWTTEEDSLLRQCINKYGEGKWH----QVPVRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.383e-17
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLIS-KSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            KG W+ EED  L+Q + K+G   W  +  ++   R  KSCRLRW N L P ++      +E ++++R H   GN+W+ IA  L GRT N +KN+WN+ L +K
Sbjct:   10 KGTWTTEEDILLRQCIDKYGEGKWHRVPLRTGLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.807e-17
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSG-----KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK-----CSSMLTENGI 459
            KG W+ EED  L+  + K+G   W      +P R+G     KSCRLRW N L P ++    + +E ++++R H   GN+W+ IA  L GRT N +KN+WN+ L +K     C S + +  I
Sbjct:   10 KGAWTAEEDSLLRLCIDKYGEGKWH----QVPLRAGLNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKKHESSCCKSKMKKKNI 126          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBL_DICDI (Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.812e-16
Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLK 423
            KG WSPEED+ L   V  +G  NW LI   + GR+   CR R+CN L PQ+    +TP+ED+ +     + G  KW+ +A+L+  RTDN     W    K
Sbjct:  652 KGRWSPEEDQCLINAVNAYGKGNWILIKNHVKGRTDVQCRERYCNVLDPQLTKIRWTPQEDKRLFDITNKVGIGKWSDVAKLMENRTDNQCWRRWKQLNK 751          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.870e-14
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  136 WSPEEDEALQQLVQKHGPRNWSLISKSIP---GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHW 408
            W PEED  L+  V+++GPR W L+S+ +     R  KSC  RW N L P ++  + T EE  ++IR  A+ GNKW  IA  + GRT   +   W
Sbjct:    7 WRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWW 100          
The following BLAST results are available for this feature:
BLAST of CV712172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYBP_MAIZE2.280e-2046.08Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB2_PHYPA2.978e-2045.28Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYB1_NEUCR1.930e-1944.23Myb-like DNA-binding protein myb-1 OS=Neurospora c... [more]
MY114_ARATH1.251e-1841.51Transcription factor MYB114 OS=Arabidopsis thalian... [more]
MY104_ARATH1.251e-1842.86Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYB75_ARATH2.787e-1840.57Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MY113_ARATH1.383e-1740.20Transcription factor MYB113 OS=Arabidopsis thalian... [more]
MYB90_ARATH1.807e-1737.19Transcription factor MYB90 OS=Arabidopsis thaliana... [more]
MYBL_DICDI5.812e-1640.00Myb-like protein L OS=Dictyostelium discoideum GN=... [more]
RS2_MAIZE1.870e-1440.43Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A09_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712172 ID=CV712172; Name=CV712172; organism=Citrus sinensis; type=EST; length=754bp
AAAAGAACCACCTCTCTCGAAGCTAAAAACTGAAATTCTCTTGCATGATC
AACACCCATTCATTGAAGTTAAATTATTTTTAATTGTTCATTAATGGCGT
TTAATAGAAGAGAAGTGGATCGGATCAAAGGTCCATGGAGCCCCGAAGAA
GACGAAGCCTTACAGCAGCTGGTTCAAAAACACGGCCCAAGAAATTGGTC
TCTAATCAGCAAATCAATTCCCGGAAGATCGGGAAAGTCTTGCCGGCTAC
GGTGGTGCAACCAGCTGTCACCTCAAGTCGAGCACCGAGCGTTCACGCCC
GAAGAAGACGAGATGATCATACGAGCCCACGCTCGGTTTGGCAACAAGTG
GGCCACCATCGCGCGCCTTCTCAACGGCCGAACCGATAACGCGATTAAGA
ATCACTGGAACTCGACCTTAAAACGTAAGTGCTCTTCGATGTTGACAGAG
AACGGTATTTTTTTGAATTGTAATGGATACGATGCGGATTTTGGGAATAG
TATTCAGCAACAGCCGTTGAAATTGAAAAGATCGGTGAGTGCGGGATCGA
GTGTGCCCGTGACCACGGGACTTTATATGAGCCCCGGTAGTCCATCGGGA
TCCGACGTCAGCGATTCAAGCGTGCCGGGTTTGTCATCGAATTACAATAT
ATACAAACCCGTGGCGAGATCTGGCGGTATCAATGTGGACGTGAATGTGG
TGCCCGAGCCGGAAACGACGTCGTCGTCTAATGACCCTCCTACTTCATTG
AGTC
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