CV712171

Overview
NameCV712171
Unique NameCV712171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:238..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.357e-14
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R GKSCRLRW N L P ++   F+ +E++ I+  H   GN+W+ IA  L GRTDN IKN WNS +K+K
Sbjct:   50 RCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKK 117          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.314e-14
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R GKSCRLRW N L P ++    T  E+  II  HA  GN+W+ IA  + GRTDN IKN+WN+ +K+K
Sbjct:   48 RCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKK 115          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.270e-12
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R  KSCRLRW N L P ++   F+ +E ++++R H   GN+W+ IA  L GRT N +KN+WN+ L +K
Sbjct:   44 RCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.270e-12
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = -2
Query:  644 IPGRSG-----KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 853
            +P R+G      SCR RW N L P ++   FT EE++ +++ HA  GNKW+ +AR   GRTDN IKN WN+   R
Sbjct:   44 VPKRTGLPHNPASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFWNARRMR 118          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.825e-12
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = -2
Query:  611 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK-----CSSMLTENGI 844
            R  KSCRLRW N L P ++    + +E ++++R H   GN+W+ IA  L GRT N +KN+WN+ L +K     C S + +  I
Sbjct:   44 RCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKKHESSCCKSKMKKKNI 126          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.825e-12
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = -2
Query:  641 IPGRSG-----KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 853
            +P R+G     KSCRLRW N L P ++    + +E ++++R H   GN+W+ IA  L GRT N +KN+WN+ L +K
Sbjct:   36 VPVRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.231e-12
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R  KSCRLRW N L P ++      +E ++++R H   GN+W+ IA  L GRT N +KN+WN+ L +K
Sbjct:   44 RCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
The following BLAST results are available for this feature:
BLAST of CV712171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
MYB3_HORVU1.357e-1451.47Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
MYB15_ANTMA2.314e-1451.47Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]
MY114_ARATH1.270e-1245.59Transcription factor MYB114 OS=Arabidopsis thalian... [more]
MY104_ARATH1.270e-1245.33Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYB90_ARATH4.825e-1239.76Transcription factor MYB90 OS=Arabidopsis thaliana... [more]
MYB75_ARATH4.825e-1242.11Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MY113_ARATH8.231e-1244.12Transcription factor MYB113 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712171 ID=CV712171; Name=CV712171; organism=Citrus sinensis; type=EST; length=863bp
TTTTTTTTTTTTTTTTTACTCACTAACCAGTCCTTTGCATGGCAACATTC
CTTAAAACCCCATCACCGCCCCCACCACTACCGTTATAACACGCGCCACC
TCTCTGCTGCTCAAGCGCCGCCATGTACGTCCTCACTTCCTGCTTTATCA
TCTCCTGCATCACAGCCATAAACTCTTTACTAAACCCCACTAATCCCTTC
GACCCACTGTCACTACTTACTGGAGCCGGCACCGAAGCTTTTGCGTTCAC
TGCCTGAGTTGACTCACTCACTTTGTTTGAAACTTCTGAGGAGGAATCCA
CACCAGGAAGGGACAGACTCAATGAAGTAGGAGGGTCATTAGACGACGAC
GTCGTTTCCGGCTCGGGCACCACATTCACGTCCACATTGATACCGCCAGA
TCTCGCCACGGGTTTGTATATATTGTAATTCGATGACAAACCCGGCACGC
TTGAATCGCTGACGTCGGATCCCGATGGACTACCGGGGCTCATATAAAGT
CCCGTGGTCACGGGCACACTCGATCCCGCACTCACCGATCTTTTCAATTT
CAACGGCTGTTGCTGAATACTATTCCCAAAATCCGCATCGTATCCATTAC
AATTCAAAAAAATACCGTTCTCTGTCAACATCGAAGAGCACTTACGTTTT
AAGGTCGAGTTCCAGTGATTCTTAATCGCGTTATCGGTTCGGCCGTTGAG
AAGGCGCGCGATGGTGGCCCACTTGTTGCCAAACCGAGCGTGGGCTCGTA
TGATCATCTCGTCTTCTTCGGGCGTGAACGCTCGGTGCTCGACTTGAGGT
GACAGCTGGTTGCACCACCGTAGCCGGCAAGACTTTCCCGATCTTCCGGG
AATTGATTTGCTG
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