CV712163

Overview
NameCV712163
Unique NameCV712163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: IMK2_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.025e-15
Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = -2
Query:  115 WNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNADEALNNDAGSG---YGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSLVRW 468
            W +R+KIA G +R L +LH   + +++H+N+ ++NILLD + N  ++D GL S +  A  A N  A +G   Y APE +     + K+DVYS G+++LELLTG+ P     P     L +W
Sbjct:  634 WETRMKIAKGISRGLAHLHS--NENMIHENLTASNILLDEQTNAHIADYGL-SRLMTAAAATNVIATAGTLGYRAPEFSKIKNASAKTDVYSLGIIILELLTGKSP---GEPTNGMDLPQW 748          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: Y5694_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.198e-14
Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = -2
Query:   67 WNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNA--DEALNNDAGSGYGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSL--VRWATPQLHDIDALAKMVD 468
            W+ R+KIALG A+AL Y+ +     ++H+N+KSANI LD +  P+LSD  L   +        ++ +  S Y APE   S +     DVYSFGVV+LEL+TG+    +      +SL  V+    +++  D  A+++D
Sbjct:  683 WSIRLKIALGVAQALAYISKDYVPHLLHRNLKSANIFLDKDFEPKLSDFALDHIVGETAFQSLVHANTNSCYTAPENHYSKKATEDMDVYSFGVVLLELVTGQSAEKAEEGSSGESLDIVKQVRRKINLTDGAAQVLD 820          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: Y1570_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana GN=At1g05700 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.198e-14
Identity = 48/155 (30.97%), Postives = 85/155 (54.84%), Query Frame = -2
Query:   13 WNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNADEALNND--AGS-GYGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADV 468
            W  R++IAL  A+ LEYLH  C   +VH+++K++NILL+ +   +L+D GL+ +      +  +   AG+ GY  P    +   N KSD+YSFGVV+LE++TG+     S+ +    +  W    L   + +  ++D  +   + V S+ +  ++
Sbjct:  664 WRQRLQIALDAAQGLEYLHCGCKPPIVHRDVKTSNILLNEKNRAKLADFGLSRSFHTESRSHVSTLVAGTPGYLDPLCFETNGLNEKSDIYSFGVVLLEMITGKTVIKESQTK-RVHVSDWVISILRSTNDVNNVIDSKMAKDFDVNSVWKVVEL 817          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: Y5393_ARATH (Probable receptor-like protein kinase At5g39030 OS=Arabidopsis thaliana GN=At5g39030 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.565e-14
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = -2
Query:  166 IALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNADEALN--NDAGS-GYGAPEV--AMSGQYNIKSDVYSFGVVMLELLTGR 450
            IALG AR LEYLH  C   +VH +IK  NILLD  L P++SD GLA      +  L+  +  G+ GY APEV   M G+ + KSDVYSFG+++++++  R
Sbjct:  598 IALGIARGLEYLHYGCKTRIVHFDIKPQNILLDGNLCPKVSDFGLAKLCEKRESVLSLMDTRGTIGYIAPEVFSRMYGRVSHKSDVYSFGMLVIDMIGAR 697          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: Y5168_ARATH (Probably inactive receptor-like protein kinase At5g41680 OS=Arabidopsis thaliana GN=At5g41680 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.565e-14
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = -2
Query:  160 WNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNADEALNNDAGSGYGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKP 468
            W SR++IA+G AR L  +HE      VH NIKS+NI  +++    + D GL     +  +       SGY APE+  + +    SDVYSFGVV+LELLTG+ P
Sbjct:  179 WESRLRIAIGAARGLAIIHEADDGKFVHGNIKSSNIFTNSKCYGCICDLGLTHITKSLPQTTLR--SSGYHAPEITDTRKSTQFSDVYSFGVVLLELLTGKSP 279          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: ACCR2_ARATH (Serine/threonine-protein kinase-like protein CCR2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.565e-14
Identity = 50/147 (34.01%), Postives = 77/147 (52.38%), Query Frame = -2
Query:   55 WNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNADEALNNDAGSGYGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSLVRWATPQLHD------ID---ALAKMVDPALK 468
            W+ R+KI L  AR L+YLH      ++H+++K++NILLD E+  +++D GL S+  N  ++ N+D                  + DVY FG+V+LE+L+GRK  D  R      +  WA P +        ID    L + V+P LK
Sbjct:  615 WSMRLKIMLQAARGLDYLHNEVDPPIIHRDVKTSNILLDGEMCARIADFGLVSS--NERDSSNSDR-----------------EGDVYDFGIVLLEILSGRKAID--RESDPAGIAEWAVPLIRKGKAAAIIDRNICLPRNVEPLLK 740          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: Y4885_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14
Identity = 42/106 (39.62%), Postives = 61/106 (57.55%), Query Frame = -2
Query:  154 WNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNADEALNNDAGS-GYGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFD 468
            W  R+ +  G A AL Y+H   S ++VH++I S NILL  +   ++SD G A  +       +  AG+ GY APE+A + +   K DVYSFGV+ LE++ G  P D
Sbjct:  876 WGKRINVVKGVAHALSYMHHDRSPAIVHRDISSGNILLGEDYEAKISDFGTAKLLKPDSSNWSAVAGTYGYVAPELAYAMKVTEKCDVYSFGVLTLEVIKGEHPGD 981          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: IRAK3_HUMAN (Interleukin-1 receptor-associated kinase 3 OS=Homo sapiens GN=IRAK3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.669e-14
Identity = 42/107 (39.25%), Postives = 67/107 (62.62%), Query Frame = -2
Query:  169 WNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLA---SNMPNADEALNNDAGSG----YGAPEVAMSGQYNIKSDVYSFGVVMLELLTG 468
            W+ R+ I +G ++A+ YLH V   SV+  +I SANILLD++  P+L+D  +A   S++ +    +N  + S     Y   E    G+ +IK+DVYSFG+V++E+LTG
Sbjct:  264 WHIRIGILIGISKAIHYLHNVQPCSVICGSISSANILLDDQFQPKLTDFAMAHFRSHLEHQSCTINMTSSSSKHLWYMPEEYIRQGKLSIKTDVYSFGIVIMEVLTG 370          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.486e-14
Identity = 51/161 (31.68%), Postives = 86/161 (53.42%), Query Frame = -2
Query:    1 RVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNAD-EALNNDAGS-------GYGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALC 459
            R++IALG+A+ + YLH   +  + H++IK++NILLD+    +++D GL+   P  D E ++    S       GY  PE  ++ Q   KSDVYS GVV+LEL TG +P    +  + +  +       ++  ++   VD  +  + P + L +FA +   C
Sbjct:  723 RLRIALGSAKGILYLHTEANPPIFHRDIKASNILLDSRFTAKVADFGLSRLAPVPDMEGISPQHVSTVVKGTPGYLDPEYFLTHQLTDKSDVYSLGVVLLELFTGMQPITHGKNIVREINI------AYESGSILSTVDKRMSSV-PDECLEKFATLALRC 876          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: IRAK4_HUMAN (Interleukin-1 receptor-associated kinase 4 OS=Homo sapiens GN=IRAK4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.486e-14
Identity = 47/111 (42.34%), Postives = 63/111 (56.76%), Query Frame = -2
Query:  145 WNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNADEALNNDAGSG---YGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFDSSR 468
            W+ R KIA G A  + +LHE      +H++IKSANILLD     ++SD GLA       + +      G   Y APE A+ G+   KSD+YSFGVV+LE++TG    D  R
Sbjct:  285 WHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHR 391          
The following BLAST results are available for this feature:
BLAST of CV712163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
IMK2_ARATH7.025e-1538.84Probably inactive leucine-rich repeat receptor-lik... [more]
Y5694_ARATH1.198e-1436.23Probably inactive leucine-rich repeat receptor-lik... [more]
Y1570_ARATH1.198e-1430.97Probable LRR receptor-like serine/threonine-protei... [more]
Y5393_ARATH1.565e-1447.00Probable receptor-like protein kinase At5g39030 OS... [more]
Y5168_ARATH1.565e-1442.72Probably inactive receptor-like protein kinase At5... [more]
ACCR2_ARATH1.565e-1434.01Serine/threonine-protein kinase-like protein CCR2 ... [more]
Y4885_ARATH2.044e-1439.62Probable LRR receptor-like serine/threonine-protei... [more]
IRAK3_HUMAN2.669e-1439.25Interleukin-1 receptor-associated kinase 3 OS=Homo... [more]
Y1684_ARATH3.486e-1431.68Probable LRR receptor-like serine/threonine-protei... [more]
IRAK4_HUMAN3.486e-1442.34Interleukin-1 receptor-associated kinase 4 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A05_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712163 ID=CV712163; Name=CV712163; organism=Citrus sinensis; type=EST; length=472bp
ACAAAGAGCAATGACATCTGCAAAACGGGAGAGAGATTTGACTGGGTAGA
GCCCTTTGAGTGCGGGATCAACCATTTTAGCAAGGGCATCAATGTCATGG
AGCTGAGGAGTTGCCCATCGAACCAAAGATTGCTCCAATCTTGGCCTCGA
GCTATCAAATGGTTTACGTCCAGTAAGAAGCTCCAGCATAACAACCCCAA
AACTGTAGACATCACTTTTTATATTATATTGACCAGACATGGCAACCTCA
GGTGCACCATATCCAGAACCAGCATCATTGTTCAATGCCTCATCTGCATT
TGGCATATTGCTTGCCAGGCCACAGTCAGAAAGTTGAGGATTGAGCTCGT
TGTCCAGTAATATGTTGGCCGACTTAATATTTTTGTGAACAACTGACAGT
GAGCAGACTTCATGCAGGTACTCCAGTGCTCGTGCAGTCCCCAAAGCAAT
CTTGACACGGGAGTTCCATATC
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