CV712162 | Citrus Genome Database

Overview


Name	CV712162
Unique Name	CV712162
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	757

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig3195	contig	Csv1_Contig3195:886..1643.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 3.047e-81
Identity = 147/186 (79.03%), Postives = 167/186 (89.78%), Query Frame = -2

Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T+KFM  P+RILVKRDELTLEGIKQFYV VEKE+WKL+TLCDLYET+ ITQ+VIF NTRRKVDWLTDK+ SR+ TVSA HGDM+Q  R++IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINFVT DD RML DI++FY+  I+E+P NVADL+
Sbjct:  226 LEVTKKFMRDPIRILVKRDELTLEGIKQFYVAVEKEDWKLDTLCDLYETVTITQAVIFCNTRRKVDWLTDKLTSREFTVSAMHGDMEQAQREVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTSDDVRMLRDIEQFYSTQIDEMPLNVADLI 411

[Close]

BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_NEUCR (ATP-dependent RNA helicase eIF4A OS=Neurospora crassa GN=tif-1 PE=3 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.280e-79
Identity = 145/186 (77.96%), Postives = 164/186 (88.17%), Query Frame = -2

Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T KFM +PVRILVK+DELTLEGIKQFY+ VEKEEWKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDMDQ  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  212 LEVTTKFMREPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 397

[Close]

BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_CHAGB (ATP-dependent RNA helicase eIF4A OS=Chaetomium globosum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.672e-79
Identity = 144/186 (77.42%), Postives = 164/186 (88.17%), Query Frame = -2

Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T KFM  PVRILVK+DELTLEGIKQFY+ VEKE+WKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+++RD TVSA HGDMDQ  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  212 LEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLQARDFTVSAMHGDMDQTQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 397

[Close]

BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_MAGGR (ATP-dependent RNA helicase eIF4A OS=Magnaporthe grisea GN=TIF1 PE=3 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 2.184e-79
Identity = 145/186 (77.96%), Postives = 163/186 (87.63%), Query Frame = -2

Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T KFM  PVRILVK+DELTLEGIKQFY+ VEKEEWKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDMDQ  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  211 LEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 396

[Close]

BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.725e-79
Identity = 144/186 (77.42%), Postives = 163/186 (87.63%), Query Frame = -2

Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T KFM  PVRILVK+DELTLEGIKQFY+ VEKE+WKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDMDQ  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  211 LEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 396

[Close]

BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_ASPTN (ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2)

HSP 1 Score: 293.508 bits (750), Expect = 8.299e-79
Identity = 144/186 (77.42%), Postives = 163/186 (87.63%), Query Frame = -2

Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T KFM  PVRILVK+ ELTLEGIKQFY+ VEKEEWKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q+ RDIIM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  211 LEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDIIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 396

[Close]

BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_ASPOR (ATP-dependent RNA helicase eIF4A OS=Aspergillus oryzae GN=tif1 PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.084e-78
Identity = 143/186 (76.88%), Postives = 163/186 (87.63%), Query Frame = -2

Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T KFM  PVRILVK+ ELTLEGIKQFY+ VEKEEWKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q+ RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  236 LEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 421

[Close]

BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.084e-78
Identity = 143/186 (76.88%), Postives = 163/186 (87.63%), Query Frame = -2

Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T KFM  PVRILVK+ ELTLEGIKQFY+ VEKEEWKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q+ RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  213 LEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398

[Close]

BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 1.849e-78
Identity = 139/186 (74.73%), Postives = 162/186 (87.10%), Query Frame = -2

Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T KFM  P+RILVK+DELTLEGIKQFYV VEKEEWKL+TLCDLYET+ +TQ+VIF NTRRKVDWLT+++  RD TVS+ HGDMDQ  RD +M EFR+GSSR+LITTDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGV+INFVT DD RM+ +I++FYN  IEE+P N+ADL+
Sbjct:  207 LEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPMNIADLI 392

[Close]

BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_ASPNC (ATP-dependent RNA helicase eIF4A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif1 PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.849e-78
Identity = 142/186 (76.34%), Postives = 162/186 (87.10%), Query Frame = -2

Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T KFM  P+RILVK+ ELTLEGIKQFY+ VEKEEWKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  213 LEVTTKFMRDPIRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQGQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398

The following BLAST results are available for this feature:

BLAST of CV712162 vs. ExPASy Swiss-Prot

BLAST of CV712162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
IF4A_USTMA	3.047e-81	79.03	ATP-dependent RNA helicase eIF4A OS=Ustilago maydi...	[more]
IF4A_NEUCR	1.280e-79	77.96	ATP-dependent RNA helicase eIF4A OS=Neurospora cra...	[more]
IF4A_CHAGB	1.672e-79	77.42	ATP-dependent RNA helicase eIF4A OS=Chaetomium glo...	[more]
IF4A_MAGGR	2.184e-79	77.96	ATP-dependent RNA helicase eIF4A OS=Magnaporthe gr...	[more]
IF4A_PHANO	3.725e-79	77.42	ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria ...	[more]
IF4A_ASPTN	8.299e-79	77.42	ATP-dependent RNA helicase eIF4A OS=Aspergillus te...	[more]
IF4A_ASPOR	1.084e-78	76.88	ATP-dependent RNA helicase eIF4A OS=Aspergillus or...	[more]
IF4A_ASPCL	1.084e-78	76.88	ATP-dependent RNA helicase eIF4A OS=Aspergillus cl...	[more]
IF4A_SCHPO	1.849e-78	74.73	ATP-dependent RNA helicase eIF4A OS=Schizosaccharo...	[more]
IF4A_ASPNC	1.849e-78	76.34	ATP-dependent RNA helicase eIF4A OS=Aspergillus ni...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_0001A04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV712162 ID=CV712162; Name=CV712162; organism=Citrus sinensis; type=EST; length=757bp
CAAATGTGCATGACCCATATGATTAAATGGTCGGATATGTTTGAGAACAA
CATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACCAAAAAAAAAAA
AAAAGGGGAGAAAAGAACCACCACATTAAACAGTACTTGCAAAATCAGGA
AACCCCTTCTTGCCTCGACAAACTTACAAAAACAGAACCTCCTCAAAGAA
GGTCAGCAACGTTTGAAGGCAGCTCCTCAATGACCACGTTATAGAACTTT
TGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCACAAAATTAATGGC
AACACCCTTTCTTCCAAATCGACCACTTCGTCCAATACGGTGAAGGTAGT
TTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAGTGAAACTTGCTGC
ACATCAATACCACGAGCCAACAGATCAGTGGTGATGAGAACACGAGAAGA
ACCAGAGCGAAATTCACGCATAATGATATCTCGGGTGTTCTGATCCATGT
CCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCGCATCTTGTCCGTA
AGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGACACTCTGGGTTAT
GGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGCTTCCATTCTTCCT
TCTCAACATTGACATAAAATTGCTTGATACCCTCAAGGGTGAGTTCATCA
CGTTTAACCAAGATTCTCACAGGCTTGTTCATAAACTTCCTTGTAATCTC
CAAGGCC