CV712162

Overview
NameCV712162
Unique NameCV712162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3195 contig Csv1_Contig3195:886..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_NEOFI (ATP-dependent RNA helicase eIF4A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tif1 PE=3 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.415e-78
Identity = 143/186 (76.88%), Postives = 162/186 (87.10%), Query Frame = -2
Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T KFM  PVRILVK+ ELTLEGIKQFY+ VEKEEWKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  213 LEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.415e-78
Identity = 143/186 (76.88%), Postives = 162/186 (87.10%), Query Frame = -2
Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T KFM  PVRILVK+ ELTLEGIKQFY+ VEKEEWKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  236 LEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 421          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_BOTFB (ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) GN=tif1 PE=3 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.415e-78
Identity = 143/186 (76.88%), Postives = 162/186 (87.10%), Query Frame = -2
Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T KFM  PVRILVK+ ELTLEGIKQFY+ VEKE+WKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDMDQ  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  213 LEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 5.379e-78
Identity = 142/186 (76.34%), Postives = 163/186 (87.63%), Query Frame = -2
Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            L++T KFM  PVRILVK+ ELTLEGIKQFY+ VEKEEWKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HG+M+QN RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  213 LDVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLIARDFTVSAMHGEMEQNQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 7.025e-78
Identity = 142/186 (76.34%), Postives = 162/186 (87.10%), Query Frame = -2
Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T KFM  PVRILVK+ ELTLEGIKQFY+ VEKE+WKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDMDQ  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D RM+ +I++FY+  IEE+P NVADL+
Sbjct:  213 LEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQFYSTQIEEMPMNVADLI 398          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 9.175e-78
Identity = 137/186 (73.66%), Postives = 163/186 (87.63%), Query Frame = -2
Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            L++T+KFM  P+RILVK+DELTLEGI+QFY+NVEKEEWKLETLCDLYET+ ITQ+VIF +TRRKVDWLT ++  R  TVSA HGDM Q  R++IM+EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINFV+ +D+ ML +I+ +YN  +EE+P NVADL+
Sbjct:  216 LDVTKKFMRDPIRILVKKDELTLEGIRQFYINVEKEEWKLETLCDLYETVTITQAVIFCSTRRKVDWLTQQLHDRQFTVSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSSKENYIHRIGRGGRFGRKGVAINFVSNEDKNMLEEIETYYNTQVEEMPLNVADLI 401          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.947e-77
Identity = 141/183 (77.05%), Postives = 159/183 (86.89%), Query Frame = -2
Query:  205 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVA 753
            LE+T KFM  PVRILVK+ ELTLEGIKQFY+ VEKEEWKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVA
Sbjct:  213 LEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVA 395          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: FAL1_NEOFI (ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1 PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.566e-75
Identity = 136/186 (73.12%), Postives = 160/186 (86.02%), Query Frame = -2
Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            L++T KFM  PVR+LVKRDELTLEGIKQ+++ VEKEEWK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HG+M Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAINFVT DD R+L DI+ +Y+  I+E+P NVADLL
Sbjct:  213 LDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNVADLL 398          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.566e-75
Identity = 136/186 (73.12%), Postives = 160/186 (86.02%), Query Frame = -2
Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            L++T KFM  PVR+LVKRDELTLEGIKQ+++ VEKEEWK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HG+M Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAINFVT DD R+L DI+ +Y+  I+E+P NVADLL
Sbjct:  213 LDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNVADLL 398          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: FAL1_ASPTN (ATP-dependent RNA helicase fal1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fal1 PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.566e-75
Identity = 136/186 (73.12%), Postives = 160/186 (86.02%), Query Frame = -2
Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            L++T KFM  PVR+LVKRDELTLEGIKQ+++ VEKEEWK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HG+M Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAINFVT DD R+L DI+ +Y+  I+E+P NVADLL
Sbjct:  213 LDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNVADLL 398          
The following BLAST results are available for this feature:
BLAST of CV712162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_NEOFI2.415e-7876.88ATP-dependent RNA helicase eIF4A OS=Neosartorya fi... [more]
IF4A_EMENI2.415e-7876.88ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]
IF4A_BOTFB2.415e-7876.88ATP-dependent RNA helicase eIF4A OS=Botryotinia fu... [more]
IF4A_COCIM5.379e-7876.34ATP-dependent RNA helicase eIF4A OS=Coccidioides i... [more]
IF4A_SCLS17.025e-7876.34ATP-dependent RNA helicase eIF4A OS=Sclerotinia sc... [more]
IF4A_CRYNE9.175e-7873.66ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
IF4A_ASPFU5.947e-7777.05ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
FAL1_NEOFI5.566e-7573.12ATP-dependent RNA helicase fal1 OS=Neosartorya fis... [more]
FAL1_EMENI5.566e-7573.12ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]
FAL1_ASPTN5.566e-7573.12ATP-dependent RNA helicase fal1 OS=Aspergillus ter... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712162 ID=CV712162; Name=CV712162; organism=Citrus sinensis; type=EST; length=757bp
CAAATGTGCATGACCCATATGATTAAATGGTCGGATATGTTTGAGAACAA
CATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACCAAAAAAAAAAA
AAAAGGGGAGAAAAGAACCACCACATTAAACAGTACTTGCAAAATCAGGA
AACCCCTTCTTGCCTCGACAAACTTACAAAAACAGAACCTCCTCAAAGAA
GGTCAGCAACGTTTGAAGGCAGCTCCTCAATGACCACGTTATAGAACTTT
TGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCACAAAATTAATGGC
AACACCCTTTCTTCCAAATCGACCACTTCGTCCAATACGGTGAAGGTAGT
TTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAGTGAAACTTGCTGC
ACATCAATACCACGAGCCAACAGATCAGTGGTGATGAGAACACGAGAAGA
ACCAGAGCGAAATTCACGCATAATGATATCTCGGGTGTTCTGATCCATGT
CCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCGCATCTTGTCCGTA
AGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGACACTCTGGGTTAT
GGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGCTTCCATTCTTCCT
TCTCAACATTGACATAAAATTGCTTGATACCCTCAAGGGTGAGTTCATCA
CGTTTAACCAAGATTCTCACAGGCTTGTTCATAAACTTCCTTGTAATCTC
CAAGGCC
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