CV712162
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RH29_ARATH (Putative DEAD-box ATP-dependent RNA helicase 29 OS=Arabidopsis thaliana GN=RH29 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.297e-20 Identity = 55/180 (30.56%), Postives = 99/180 (55.00%), Query Frame = -2 Query: 214 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQ-SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 750 E + + +P + + + +K ++ V EE L + E ++ Q ++IFV+T+ V+++ + + S +GDMDQ+ R I + FR+ + +LI TD+ ARGID+ + VIN+D P +P+ ++HR+GR+ R GR G A +FVT +D + D+ F + + P+ Sbjct: 220 EFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLHLFLSKPVRPAPT 399
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DED1_USTMA (ATP-dependent RNA helicase DED1 OS=Ustilago maydis GN=DED1 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.297e-20 Identity = 57/177 (32.20%), Postives = 97/177 (54.80%), Query Frame = -2 Query: 217 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 747 + + F+ + V + V R T E I Q VE ++ + L L + ++IFV T+R D L+D + ++ HGD Q R+ + FRSG + +++ T + ARG+D+ V+ V+NYDLP+ ++Y+HRIGR+GR G G A F R ++ ++ D+ + +E+P Sbjct: 401 LAKDFLKEYVFLSVGRVGSTSENITQKIEYVEDDDKRSVLLDVLASMPSGGLTLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGNKNIVRDLIELLKEANQEVP 577
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: ROK1_PICST (ATP-dependent RNA helicase ROK1 OS=Pichia stipitis GN=ROK1 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20 Identity = 53/162 (32.72%), Postives = 89/162 (54.94%), Query Frame = -2 Query: 268 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI-FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 750 E+ M P+R+++ R E I Q V EE KL + + + +I F+ + + L ++ V H + R+ +++ F++G VLITTD+LARG+D + V++VINYD+P + Y+HRIGR+GR G+ G A+ F T++D++ Sbjct: 317 EMAHSIMRDPIRVIIGRKEAASNTIDQKLVFTGSEEGKLLAIRQMIQEGEFKPPIIIFLQSIHRAKALFHELLYDKLNVDVIHAERTPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDVPQTAQAYVHRIGRTGRGGKAGRAVTFFTKEDDQ 478
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_VIBFM (ATP-dependent RNA helicase rhlB OS=Vibrio fischeri (strain MJ11) GN=rhlB PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20 Identity = 59/187 (31.55%), Postives = 103/187 (55.08%), Query Frame = -2 Query: 196 EITRKFMNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 750 E+ + M +P ++V+ ++ T IK+ FY + + K+ L L E +++IF NT+ K + + + + H V GD+ Q R+ I+ EF G+ +L+ TD+ ARG+ + QV+ V N+DLP + E+Y+HRIGR+GR G G +I+F + L I+++ I + + + LL Sbjct: 207 ELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPS---NDHKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERILEEFTQGNVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEYAINLPAIEEYIEHSIPQSDYDASALL 390
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_VIBF1 (ATP-dependent RNA helicase rhlB OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rhlB PE=3 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20 Identity = 59/187 (31.55%), Postives = 103/187 (55.08%), Query Frame = -2 Query: 196 EITRKFMNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 750 E+ + M +P ++V+ ++ T IK+ FY + + K+ L L E +++IF NT+ K + + + + H V GD+ Q R+ I+ EF G+ +L+ TD+ ARG+ + QV+ V N+DLP + E+Y+HRIGR+GR G G +I+F + L I+++ I + + + LL Sbjct: 207 ELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPS---NDHKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERILEEFTQGNVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEYAINLPAIEEYIEHSIPQSDYDASALL 390
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_SHEHH (ATP-dependent RNA helicase rhlB OS=Shewanella halifaxensis (strain HAW-EB4) GN=rhlB PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20 Identity = 53/160 (33.12%), Postives = 90/160 (56.25%), Query Frame = -2 Query: 277 EITRKFMNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 750 E+ MN+P ++ + +E T + IK+ FY ++E+ K+ L L E ++++F NT+ + + + H GD+ Q R I+ +F G +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G+KG++++F + Sbjct: 207 ELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEE---KMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGEIDILVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISVSFACEE 363
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RH24_ARATH (DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana GN=RH24 PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20 Identity = 61/190 (32.11%), Postives = 103/190 (54.21%), Query Frame = -2 Query: 199 EITRKFMNKPVRILVKRDELTLEGIKQFYVNV-----EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG-RKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 750 ++ R+ ++ P+R+ V + E I Q VNV EK W LE L + + + ++F + + VD + ++ V+A HGD DQ +R +++F+SG VLI TD+ ARG+D++ + V+NYD+ + ++HRIGR+GR G R GVA VT+ + R ++ + +P + DL Sbjct: 422 KLAREILSDPIRVTVGEVGMANEDITQV-VNVIPSDAEKLPWLLEKLPGMIDEGDV---LVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPELTDL 607
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: PRP5_CRYNE (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus neoformans GN=PRP5 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20 Identity = 55/172 (31.98%), Postives = 92/172 (53.49%), Query Frame = -2 Query: 253 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT-------QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 747 + R+ + KP+ I V + I Q V V + K L ++ + +++IFV+ + D L ++ R + ++ HG +Q RD ++ F++G +++ T + ARG+DV+++ LVINYD P E+Y+HR GR+GR G KG I F+T + ER DI Sbjct: 601 LARRILVKPLEITVGGRSVVAPEIDQ-RVEVRDGDTKFTRLLEILGEMGEEHKDEDDFRTLIFVDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFKNGDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPEQERFSVDI 771
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP8_NEOFI (ATP-dependent RNA helicase dbp8 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp8 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20 Identity = 48/130 (36.92%), Postives = 80/130 (61.54%), Query Frame = -2 Query: 223 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 612 E A ++IF N + D L +R H V++ H + Q+ R+ + FR+ ++R+L+ TD+ +RG+D+ VSLVINYD+P P++Y+HR+GR+ R GR G AI V + D +++ I++ +EE Sbjct: 347 EDNASRPAIIFCNHTKTADLLERMLRRLTHRVTSLHSLLPQSERNANLARFRASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRSGEAITLVGQRDVQLVLAIEERVGRQMEE 476
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP8_EMENI (ATP-dependent RNA helicase dbp8 OS=Emericella nidulans GN=dbp8 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20 Identity = 45/119 (37.82%), Postives = 80/119 (67.23%), Query Frame = -2 Query: 247 ITQS-VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 600 IT+S ++F NT + D L +RS H V++ H + Q+ R+ + FR+ ++RVL+ TD+ +RG+D+ VSLV+N+++P P++Y+HR+GR+ R GR G A+ V + D +++ I++ Sbjct: 349 ITKSAIVFTNTTKSADLLERLLRSLGHRVTSLHSLLPQSERNSNLARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGRTGEAVTLVGQRDVQLVLAIEE 467 The following BLAST results are available for this feature:
BLAST of CV712162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712162 ID=CV712162; Name=CV712162; organism=Citrus sinensis; type=EST; length=757bpback to top |