CV712161

Overview
NameCV712161
Unique NameCV712161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3195 contig Csv1_Contig3195:92..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: IF4A3_CHICK (Eukaryotic initiation factor 4A-III OS=Gallus gallus GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.375e-62
Identity = 122/188 (64.89%), Postives = 147/188 (78.19%), Query Frame = 1
Query:  205 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATF   +LQ LD  + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ LP   QV
Sbjct:   28 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 215          

HSP 2 Score: 26.1794 bits (56), Expect = 1.375e-62
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SAT+P E LE+T KFM
Sbjct:  217 LISATLPHEILEMTNKFM 234          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: IF4A3_TAEGU (Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.375e-62
Identity = 122/188 (64.89%), Postives = 147/188 (78.19%), Query Frame = 1
Query:  205 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATF   +LQ LD  + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ LP   QV
Sbjct:   26 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 213          

HSP 2 Score: 26.1794 bits (56), Expect = 1.375e-62
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SAT+P E LE+T KFM
Sbjct:  215 LISATLPHEILEMTNKFM 232          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: IF4A3_MOUSE (Eukaryotic initiation factor 4A-III OS=Mus musculus GN=Eif4a3 PE=2 SV=3)

HSP 1 Score: 234.958 bits (598), Expect = 1.375e-62
Identity = 122/188 (64.89%), Postives = 147/188 (78.19%), Query Frame = 1
Query:  205 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATF   +LQ LD  + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ LP   QV
Sbjct:   27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 214          

HSP 2 Score: 26.1794 bits (56), Expect = 1.375e-62
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SAT+P E LE+T KFM
Sbjct:  216 LISATLPHEILEMTNKFM 233          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: IF4A3_HUMAN (Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4)

HSP 1 Score: 234.958 bits (598), Expect = 1.375e-62
Identity = 122/188 (64.89%), Postives = 147/188 (78.19%), Query Frame = 1
Query:  205 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATF   +LQ LD  + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ LP   QV
Sbjct:   27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 214          

HSP 2 Score: 26.1794 bits (56), Expect = 1.375e-62
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SAT+P E LE+T KFM
Sbjct:  216 LISATLPHEILEMTNKFM 233          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 8.812e-62
Identity = 117/180 (65.00%), Postives = 142/180 (78.89%), Query Frame = 1
Query:  226 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            +V  +FDAMGL+E+LLRGIYAY FEKPSAIQQR I+P  +G DVI QAQSGTGKTATF   +LQ +D  L + QALVL+PTRELA QI+ V+ ALGDYL V+ HAC+GGTSV ED R L  G H+V GTPGRV+DM+RR+ LR   IKM +LDE+DE+L+ GFKDQIYD+++ LP   QV
Sbjct:   21 KVATTFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYLNVQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMIRRRHLRTKNIKMLILDESDELLNMGFKDQIYDVYRYLPPSTQV 200          

HSP 2 Score: 25.409 bits (54), Expect = 8.812e-62
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SAT+P + LE+T KFM
Sbjct:  202 LLSATLPQDVLEMTSKFM 219          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: IF4A3_MACFA (Eukaryotic initiation factor 4A-III OS=Macaca fascicularis GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 1.498e-61
Identity = 120/188 (63.83%), Postives = 145/188 (77.13%), Query Frame = 1
Query:  205 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATF   +LQ LD  + + QAL+LAP RELA QI+K +  LGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ LP   QV
Sbjct:   27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPARELAVQIQKGLLTLGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 214          

HSP 2 Score: 26.1794 bits (56), Expect = 1.498e-61
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SAT+P E LE+T KFM
Sbjct:  216 LISATLPHEILEMTNKFM 233          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: FAL1_CRYNE (ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.547e-61
Identity = 116/179 (64.80%), Postives = 142/179 (79.33%), Query Frame = 1
Query:  229 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            V  +F+A+ L+E+LLRGIYAY FEKPSAIQQR I+P  +G DVI QAQSGTGKTATF   +LQ +D  L + QALVL+PTRELA QI+ V+ ALGDY+ V  HAC+GGTSV ED R L+AG  VV GTPGRVFDM+RR++LR   IKM +LDE+DE+L++GFKDQIYDI++ LP   QV
Sbjct:   21 VAPTFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMIRRRNLRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPATQV 199          

HSP 2 Score: 25.7942 bits (55), Expect = 2.547e-61
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            V SAT+P + LE+T KFM
Sbjct:  201 VVSATLPHDVLEMTTKFM 218          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: RH34_ORYSJ (DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica GN=Os03g0566800 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 5.645e-61
Identity = 111/180 (61.67%), Postives = 142/180 (78.89%), Query Frame = 1
Query:  226 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            EV  SFD MG++E+LLRGIYAYGFEKPSAIQQR ++P   G DVI QAQSGTGKT+     + Q +D  + + QAL+L+PTRELA Q E+VM A+GDY+ ++VHAC+GG S+ ED R L+ GVHVV GTPGRV DM++R++LR   IK+ +LDEADEML RGFKDQIYD+++ LP ++QV
Sbjct:   28 EVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQV 207          

HSP 2 Score: 25.7942 bits (55), Expect = 5.645e-61
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SAT+P E LE+T KFM
Sbjct:  209 LISATLPHEILEMTSKFM 226          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 1.252e-60
Identity = 112/196 (57.14%), Postives = 144/196 (73.47%), Query Frame = 1
Query:  178 NELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            + + + +  +  T+YD++   FD + L+E LLRGIY YGF  PSAIQQR I+P  +G DV+ QAQSGTGKT TF    LQ++D  +   QAL+LAPTRELA QI+KV+ AL  ++ VKVHAC+GGT  RED   L+AG  +VVGTPGRVFDM+ R++ + D+IKMF+LDEADEMLS GFK+QIY IF +LP   QV
Sbjct:    3 DSITNPENSEIQTNYDKIVHKFDELKLKEVLLRGIYGYGFVDPSAIQQRAILPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDESIKAPQALILAPTRELALQIQKVVMALALHMDVKVHACIGGTDPREDAEALRAGAQIVVGTPGRVFDMIERRNFKTDHIKMFILDEADEMLSSGFKEQIYKIFTMLPPTTQV 198          

HSP 2 Score: 26.9498 bits (58), Expect = 1.252e-60
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SATMP E L++T KFM
Sbjct:  200 LLSATMPKEVLDVTDKFM 217          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.616e-60
Identity = 109/180 (60.56%), Postives = 142/180 (78.89%), Query Frame = 1
Query:  226 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            EV  SFD MG++++LLRGIYAYGFEKPSAIQQR ++P   G DVI QAQSGTGKT+     + Q +D  + + QAL+L+PTRELA Q E+VM A+GD++ ++VHAC+GG S+ ED R L+ GVHVV GTPGRV DM++R++LR   IK+ +LDEADEML RGFKDQIYD+++ LP ++QV
Sbjct:   28 EVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQV 207          

HSP 2 Score: 25.7942 bits (55), Expect = 3.616e-60
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SAT+P E LE+T KFM
Sbjct:  209 LISATLPHEILEMTSKFM 226          
The following BLAST results are available for this feature:
BLAST of CV712161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A3_CHICK1.375e-6264.89Eukaryotic initiation factor 4A-III OS=Gallus gall... [more]
IF4A3_TAEGU1.375e-6264.89Eukaryotic initiation factor 4A-III OS=Taeniopygia... [more]
IF4A3_MOUSE1.375e-6264.89Eukaryotic initiation factor 4A-III OS=Mus musculu... [more]
IF4A3_HUMAN1.375e-6264.89Eukaryotic initiation factor 4A-III OS=Homo sapien... [more]
FAL1_USTMA8.812e-6265.00ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
IF4A3_MACFA1.498e-6163.83Eukaryotic initiation factor 4A-III OS=Macaca fasc... [more]
FAL1_CRYNE2.547e-6164.80ATP-dependent RNA helicase FAL1 OS=Cryptococcus ne... [more]
RH34_ORYSJ5.645e-6161.67DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sa... [more]
IF4A_ASHGO1.252e-6057.14ATP-dependent RNA helicase eIF4A OS=Ashbya gossypi... [more]
RH2_ORYSJ3.616e-6060.56DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A04_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712161 ID=CV712161; Name=CV712161; organism=Citrus sinensis; type=EST; length=825bp
AGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATCTTCTCCTTCT
CTTTGAAGAAAAAAGAAAACCAACTCTTTCTCTCGATTTTAATCACCATC
ATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAGGATCTCAATTT
GATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTCTCTACTGATGG
GCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAGTTTTGATGCAA
TGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCCTATGGGTTTGAG
AAGCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTCTGCAAGGGACT
TGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAACAGCAACTTTCT
GCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCC
CTGGTATTGGCACCCACTAGGGAACTAGCTCAACAGATTGAGAAAGTAAT
GAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTG
GGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTT
GTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGCCGACAGTCTTT
ACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGCTGATGAAATGC
TTTCCCGTGGTTTTAAGGATCAGATCTATGATATTTTCCAGCTGCTTCCA
GCTAAAGTTCAGGTGGGGGGTTTTCTCTGCTACTATGCCTCCTGAGGCCT
TGGAGATTACAAGGAAGTTTATGAA
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