CN192499

Overview
NameCN192499
Unique NameCN192499
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2079 contig Csv1_Contig2079:37..828. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192499 vs. ExPASy Swiss-Prot
Match: YMN1_YEAST (Uncharacterized membrane protein YML131W OS=Saccharomyces cerevisiae GN=YML131W PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.454e-14
Identity = 65/226 (28.76%), Postives = 109/226 (48.23%), Query Frame = 1
Query:  151 VLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAP--QLLIKIQHTDV-PLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVY-----VSAASGAVGQLVGQFA--KLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCF--PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMI 792
            +LL+  YLS DP  ++ +S +D+ ++     PGE I   G+ KVL S +  ++  D V   TGW  +++++    Q L K+    V  L +Y  +LG   +TAY   +     ++ E  Y     +S A+GAVG +  Q A        V+  AG  EKV  +++ FG +      ++P     L         +D + +NVG  +L+A +L ++ R  +  CG I
Sbjct:   47 LLLETTYLSNDPAQKFWISSMDK-NYAKGVQPGEIIPARGIGKVLASRNKAFSPGDYVSAVTGWTTHAIISQENVQGLRKLDKNKVGKLWWYLSVLGGTSLTAYFIFFTYAQLQEREEDYGKVYLISGAAGAVGTVCIQLALNVFKASKVIAIAGGPEKVAFVES-FGDNVVGVDYKDPSFKQKLIEAAGGENTVDYFIDNVGSNVLEAGVLLLKQRAMLIACGAI 270          
BLAST of CN192499 vs. ExPASy Swiss-Prot
Match: QOR_LEIAM (Probable quinone oxidoreductase OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.511e-14
Identity = 45/124 (36.29%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  424 ILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAK-LAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMI 792
            +L +  +TA   L EV   KKG+   V+AA+G  GQ+  Q  K + GC V+G+  S+EK + LK+  G D   NYK E  LD  L    P+G+D+ +E VGG   +  + ++ +  R+ + G I
Sbjct:  125 VLPVSALTAAVALGEVGRVKKGDVALVTAAAGGTGQIAVQLLKHVYGCTVIGTCSSEEKAEFLKS-IGCDHVINYKTE-SLDGRLHELCPKGVDVVYECVGGHTFNDAVRHVAVHARVVIIGSI 246          
The following BLAST results are available for this feature:
BLAST of CN192499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
YMN1_YEAST3.454e-1428.76Uncharacterized membrane protein YML131W OS=Saccha... [more]
QOR_LEIAM4.511e-1436.29Probable quinone oxidoreductase OS=Leishmania amaz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006P21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006P21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192499 ID=CN192499; Name=CN192499; organism=Citrus sinensis; type=EST; length=792bp
AAAACTGAGAACAATGGCGGCTGAACAGAAGCTGTGAGCAATAAGCGGGT
GATTCTGAGCAACTATGTGACAGGTTTTCCAAAAGAATCAGACATGAAGA
TAACAAGTGGATCAATAAAGCTGAAGGTAGCAGAGGGTTCAAAAGACACA
GTGCTTTTGAAGAATCTTTATCTTTCTTGTGATCCTTACATGCGATGGCG
TATGAGCAAGCTTGATAGACCTTCTTTTGTTGATTCATTCCATCCTGGTG
AGCCTATAAATGGTTATGGGGTAGCTAAAGTTTTGGATTCTACACATCCA
AATTATGCAAAAGATGACTTGGTTTGGGGCTCCACCGGGTGGGAGGAGTA
CAGTCTCGTTACAGCCCCACAGCTTTTGATTAAAATTCAGCATACAGATG
TGCCCCTTTCATACTATACTGGAATCCTTGGTATGCCTGGTGTGACTGCA
TACGCTGGTTTATACGAAGTTTGCTCTCCGAAGAAAGGTGAGTACGTCTA
TGTATCTGCAGCATCTGGAGCTGTTGGTCAGCTTGTTGGCCAATTTGCAA
AATTGGCTGGTTGCTATGTTGTTGGAAGTGCTGGAAGCAAAGAAAAGGTC
GATTTGTTGAAGAACAAGTTTGGATTTGATGATGCTTTTAACTACAAGCA
AGAGCCAGACTTGGATGCAGCACTCAAAAGATGCTTCCCTCAAGGAATCG
ACATATATTTCGAAAACGTTGGGGGAAAGATGCTGGACGCAGTGCTACTC
AACATGAGGCTCCGGGGCCGCATTGCGGTATGCGGTATGATC
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