CN192486

Overview
NameCN192486
Unique NameCN192486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length369
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL19_PYRAB (50S ribosomal protein L19e OS=Pyrococcus abyssi GN=rpl19e PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.352e-20
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 3
Query:   42 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTK 317
            M +LK+Q+R++A +LKCG  ++W+DP  V++++ A +R++IR+L+K+G I +KP K  SR RAR   E K+KGRH G G RKG + AR+  K
Sbjct:    1 MKTLKMQRRVAAELLKCGENRIWIDPERVDDVASAITREDIRRLIKEGVIKKKPVKGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKK 92          
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL19_PYRFU (50S ribosomal protein L19e OS=Pyrococcus furiosus GN=rpl19e PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.711e-20
Identity = 41/92 (44.57%), Postives = 67/92 (72.83%), Query Frame = 3
Query:   42 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTK 317
            M +LK+Q+R++A +LKCG  ++W+DP  +++++ A +R++I++L+K+G I +KP K  SR RA+   E K+KGRH G G RKG + AR+  K
Sbjct:    1 MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGSRKGKKTARMGKK 92          
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL19_ARCFU (50S ribosomal protein L19e OS=Archaeoglobus fulgidus GN=rpl19e PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.145e-19
Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = 3
Query:   42 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTK 317
            ++ L LQ+RL+ASVLKCG  +VW DP  + +I+ A ++Q+IR+L++ G I RKP    SR+R  + K  KRKGR  G+G RKG + AR+P K
Sbjct:    3 VMDLSLQRRLAASVLKCGENRVWFDPAALEDIATAATKQDIRELIEQGVIKRKPVNGVSRARINKRKLQKRKGRRRGHGSRKGAKGARMPRK 94          
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL19_METJA (50S ribosomal protein L19e OS=Methanocaldococcus jannaschii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.070e-17
Identity = 37/92 (40.22%), Postives = 63/92 (68.48%), Query Frame = 3
Query:   42 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTK 317
            ++ + +Q+R++A +LKCG  +VW+DP +++ + MA S+ +IR L+K+G I +K  K  S +R +++KE ++KGR  G G R+G   AR P K
Sbjct:    3 IMDVSVQRRMAAEILKCGIERVWIDPTQLDRVKMAMSKDDIRALIKEGVIKKKQKKGISSARVKKLKEQRKKGRRRGPGSRRGAAGARTPPK 94          
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL19_METVA (50S ribosomal protein L19e OS=Methanococcus vannielii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.003e-15
Identity = 36/91 (39.56%), Postives = 60/91 (65.93%), Query Frame = 3
Query:   45 VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTK 317
            + +  Q+R++A+VL CG  +VW+DP  + ++ MA ++ +IR L+ DG I++K  K  S +R + ++E KRKG+  G G R+G + AR P K
Sbjct:    1 MDVSTQRRIAAAVLDCGIDRVWVDPENLEKVKMAITKDDIRLLINDGIIVKKQEKGISSARKKEVQEQKRKGKRKGPGSRRGAKGARTPKK 91          
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL19_METTH (50S ribosomal protein L19e OS=Methanobacterium thermoautotrophicum GN=rpl19e PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.003e-15
Identity = 38/91 (41.76%), Postives = 60/91 (65.93%), Query Frame = 3
Query:   45 VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTK 317
            ++L  QKRL+A +LK G  ++W+DP  ++E+S A +R  +++L+KDG I  KP K  S  R++++ + K+KGR  G G  KG + AR P K
Sbjct:    1 MNLTTQKRLAADILKVGVNRIWIDPERIDEVSRAITRDGVKQLIKDGAIKAKPKKGISSYRSKKIAQQKKKGRRRGPGSIKGAKGARRPKK 91          
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL19_HALMA (50S ribosomal protein L19e OS=Haloarcula marismortui GN=rpl19e PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.019e-12
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 3
Query:   42 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTK 317
            M  L  QKRL+A VL  G+ +VW +P    +I+ A +R+++R+LV +G I  K  K +SR RAR  ++ +  G   G G RKG   AR  +K
Sbjct:    1 MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSK 92          
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL19E_HALSA (50S ribosomal protein L19e OS=Halobacterium salinarium GN=rpl19e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.019e-12
Identity = 39/88 (44.32%), Postives = 52/88 (59.09%), Query Frame = 3
Query:   42 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREAR 305
            M  L  QKRL+A VL  G  +VW DP+  +EI+ A +R++IR+LV DG I  + T+ +SR RAR     +  G   G G RKG   AR
Sbjct:    1 MSDLSAQKRLAADVLDVGENRVWFDPDAQSEIADAITREDIRELVADGTIDAEDTQGNSRGRARERDAKESYGHKKGAGSRKGKAGAR 88          
The following BLAST results are available for this feature:
BLAST of CN192486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RL19_PYRAB1.352e-2047.8350S ribosomal protein L19e OS=Pyrococcus abyssi GN... [more]
RL19_PYRFU6.711e-2044.5750S ribosomal protein L19e OS=Pyrococcus furiosus ... [more]
RL19_ARCFU1.145e-1948.9150S ribosomal protein L19e OS=Archaeoglobus fulgid... [more]
RL19_METJA9.070e-1740.2250S ribosomal protein L19e OS=Methanocaldococcus j... [more]
RL19_METVA1.003e-1539.5650S ribosomal protein L19e OS=Methanococcus vannie... [more]
RL19_METTH1.003e-1541.7650S ribosomal protein L19e OS=Methanobacterium the... [more]
RL19_HALMA3.019e-1240.2250S ribosomal protein L19e OS=Haloarcula marismort... [more]
RL19E_HALSA3.019e-1244.3250S ribosomal protein L19e OS=Halobacterium salina... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006P14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006P14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192486 ID=CN192486; Name=CN192486; organism=Citrus sinensis; type=EST; length=369bp
GAGGATCGCGAGAGACAGAGGGGGAGAGAAGAGAAGGGAAAATGGTGTCG
TTGAAGTTACAGAAGCGGCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGG
CAAGGTCTGGCTTGACCCTAATGAGGTCAACGAAATCTCCATGGCCAACT
CCAGGCAGAACATTAGGAAATTGGTGAAGGATGGTTTCATCATCAGGAAG
CCAACAAAGATCCACTCCCGTTCTCGCGCTCGCAGAATGAAGGAAGCCAA
GAGGAAGGGCCGTCACTCTGGATATGGTAAGAGAAAGGGTACTAGGGAGG
CGAGGCTTCCCACCAAAATCCTCTGGATGAGAAGGATGCGTGTGCTCAGG
CGGTTGCTCCGCAAATACC
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