CN192476

Overview
NameCN192476
Unique NameCN192476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192476 vs. ExPASy Swiss-Prot
Match: ADH1_EMENI (Alcohol dehydrogenase 1 OS=Emericella nidulans GN=alcA PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13
Identity = 52/187 (27.81%), Postives = 90/187 (48.13%), Query Frame = 1
Query:  139 RIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKSEAIERLGADSFLVSRDQDEMQAAM--GTMDG-----IIDTVSAVHPLMPLIGLLKSQGKLVLVG-APEKPLELPAFSLLMGRKIVGGSMIGGMKETQEMIDFAAKHNIRADIEVIP 675
            +IP G PLDA AP+LCAGITVY  L+  G+                    ++AKAMG++V  +     K++   E LG ++++      ++ A +   T DG     +I    +  P       ++S+G +V +G  P+  L+ P  + ++    + GS +G  ++  E +DF A+  I+A  +  P
Sbjct:  139 KIPAGVPLDAAAPVLCAGITVYKGLKEAGVRPGQTVAIVGAGGGLGSLAQQYAKAMGIRVVAVDGGDEKRA-MCESLGTETYVDFTKSKDLVADVKAATPDGLGAHAVILLAVSEKPFQQATEYVRSRGTIVAIGLPPDAYLKAPVINTVVRMITIKGSYVGNRQDGVEALDFFARGLIKAPFKTAP 324          
BLAST of CN192476 vs. ExPASy Swiss-Prot
Match: ADH2_CAEEL (Alcohol dehydrogenase 2 OS=Caenorhabditis elegans GN=sodh-2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 50/216 (23.15%), Postives = 99/216 (45.83%), Query Frame = 1
Query:   79 GTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKSEAIERLGADSFLVSRDQDEMQAAM-----GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLVGAP-EKPLELPAFSLLMGRKIVGGSMIGGMKETQEMIDFAAKHNIRADIEVIPADYVNTALERL 708
            G   +G + + +   +   +++   T L A AP+LC G+T Y  L+   +    +               ++AKAMG++  V++     K +    LGA+ F+ + D  ++ A +     G   G++   +A  P+   +  ++ +G +V VG P +  + L   SL+     V GS++G   +  E IDF  +  +   IE++  + V +  +R+
Sbjct:  122 GIDRHGTFQEYLTIRDIDAIKVSNDTNLAAAAPVLCGGVTAYKSLKATNVKPGQIVVLTGAGGGLGSFGIQYAKAMGMR--VVAVDHISKEDHCRNLGAEWFVDAFDTPDIVAHIRKLTNGGAHGVVSFAAAKKPMEYALEYVRKRGTVVFVGLPKDGTIPLDTLSLICNEITVKGSIVGSRMDVDEAIDFITRGIVHVPIELVKLEDVPSVYQRM 335          
BLAST of CN192476 vs. ExPASy Swiss-Prot
Match: ADH1_KLUMA (Alcohol dehydrogenase 1 OS=Kluyveromyces marxianus GN=ADH1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 56/228 (24.56%), Postives = 102/228 (44.74%), Query Frame = 1
Query:    7 DSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKSEAIERLGADSFLVSRDQDEM-----QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLVGAP-EKPLELPAFSLLMGRKIVGGSMIGGMKETQEMIDFAAKHNIRADIEVI 672
            + C +  E  CPK  ++     HDG+     +     AD     RIP+   L   AP+LCAG+TVY  L+   +                    ++AKAMG +V  I     +K++  + LG + F+      +M     +A  G    +I+   +   +   +   +S G +VLVG P +   +   F+ ++    + GS +G   +T+E +DF ++  ++A I+++
Sbjct:  102 EECELSNEPNCPKADLS--GYTHDGS-----FQQYATADAVQAARIPKNVDLAEVAPILCAGVTVYKALKSAHIKAGDWVAISGACGGLGSLAIQYAKAMGYRVLGIDAG-DEKAKLFKELGGEYFIDFTKTKDMVAEVIEATNGVAHAVINVSVSEAAISTSVLYTRSNGTVVLVGLPRDAQCKSDVFNQVVKSISIVGSYVGNRADTREALDFFSRGLVKAPIKIL 321          
BLAST of CN192476 vs. ExPASy Swiss-Prot
Match: ADH_STAES (Alcohol dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=adh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 55/238 (23.11%), Postives = 106/238 (44.54%), Query Frame = 1
Query:   13 CAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAK-AMGVKVTVISTSPSKKSEAIERLGADSFLVSRDQDEMQAAMGT-----MDGIIDTVSAVHPLMPLIGLLKSQGKLVLVGAPEKPLELPAFSLLMGRKIVGGSMIGGMKETQEMIDFAAKHNIRADIEVIPADYVNTALERL 708
            C    E  C  V+       + G    G  ++ ++ D ++ V++PE     A + + CAG+T Y  ++  G++ PG                ++AK  MG KV     +  K + A E LGAD+ + S + D ++          +D  + T  A  P    + ++K+  ++V VG P   ++L    L++    V GS++G  ++ +E   FAA++ +   I++     +N   + +
Sbjct:   95 CTTGRETLCRDVL-------NAGYTVDGAMAEEVIVDANYAVKVPENLDPAAASSITCAGVTTYKAVKVSGIE-PGQWLGVFGVGGLGNLALQYAKNVMGAKVVAFDINDDKLNFAKE-LGADAIINSTNVDPIEEVNRLTNNKGLDATVITAVAKTPFNQAVDVVKAGARVVAVGLPVDKMDLDIPRLVLDGIEVVGSLVGTRQDLREAFQFAAENKVIPKIQLRQLSEINDIFDEM 323          
BLAST of CN192476 vs. ExPASy Swiss-Prot
Match: ADH4_KLULA (Alcohol dehydrogenase 4, mitochondrial OS=Kluyveromyces lactis GN=ADH4 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 64/239 (26.78%), Postives = 109/239 (45.61%), Query Frame = 1
Query:   10 SCAIDLENYCPKVIMTYANKY-HDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGM-XXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKSEAIERLGADSFLVSRDQDEM-----QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLVGAP-EKPLELPAFSLLMGRKIVGGSMIGGMKETQEMIDFAAKHNIRADIEVIPADYVNTALE 702
            SC +  + Y    +    + Y HDG+     +     AD     +IP+GT L   AP+LCAG+TVY  L+   L KPG                 ++AKAMG++V  I     K+ E  ++ G + F+  R   +M     +A  G   G+I+   +   +      ++  G +VLVG P +  ++   FS ++    + GS +G   +T+E  DF  +  +++ I++I    +  A E
Sbjct:  127 SCELCEQGYESNCLQADLSGYTHDGS-----FQQYATADAVQAAQIPKGTDLAEIAPILCAGVTVYKALKTADL-KPGQWVAISGAAGGLGSLAVQYAKAMGLRVLGIDGGDGKE-ELFKQCGGEVFIDFRKSKDMVADIQEATNGGPHGVINVSVSEAAISMSTEYVRPTGVVVLVGLPADAYVKSEVFSHVVKSISIKGSYVGNRADTREATDFFTRGLVKSPIKIIGLSELPEAYE 358          
BLAST of CN192476 vs. ExPASy Swiss-Prot
Match: ADH_STAEQ (Alcohol dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=adh PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 54/238 (22.69%), Postives = 106/238 (44.54%), Query Frame = 1
Query:   13 CAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAK-AMGVKVTVISTSPSKKSEAIERLGADSFLVSRDQDEMQAAMGT-----MDGIIDTVSAVHPLMPLIGLLKSQGKLVLVGAPEKPLELPAFSLLMGRKIVGGSMIGGMKETQEMIDFAAKHNIRADIEVIPADYVNTALERL 708
            C    E  C  V+       + G    G  ++ ++ D ++ V++PE     A + + CAG+T Y  ++  G++ PG                ++AK  MG KV     +  K + A E LGAD+ + S + D ++          +D  + T  A  P    + ++K+  ++V VG P   ++L    L++    V GS++G  ++ +E   FAA++ +   +++     +N   + +
Sbjct:   95 CTTGRETLCRDVL-------NAGYTVDGAMAEEVIVDANYAVKVPENLDPAAASSITCAGVTTYKAVKVSGIE-PGQWLGVFGVGGLGNLALQYAKNVMGAKVVAFDINDDKLNFAKE-LGADAIINSTNVDPIEEVNRLTNNKGLDATVITAVAKTPFNQAVDVVKAGARVVAVGLPVDKMDLDIPRLVLDGIEVVGSLVGTRQDLREAFQFAAENKVIPKVQLRQLSEINDIFDEM 323          
BLAST of CN192476 vs. ExPASy Swiss-Prot
Match: ADH_STAAW (Alcohol dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=adh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 50/211 (23.70%), Postives = 98/211 (46.45%), Query Frame = 1
Query:   94 GGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAK-AMGVKVTVISTSPSKKSEAIERLGADSFLVSRDQDEMQAAMGT-----MDGIIDTVSAVHPLMPLIGLLKSQGKLVLVGAPEKPLELPAFSLLMGRKIVGGSMIGGMKETQEMIDFAAKHNIRADIEVIPADYVNTALERL 708
            G  ++ ++    + V++PE     A + + CAG+T Y  ++   + KPG                ++AK  MG K+     +  K + A E LGAD+ + S+D D +   M       +D  + T  A  P    + ++K+  ++V VG P   + L    L++    V GS++G  ++ +E  +FAA++ +   +++   + +N   E +
Sbjct:  115 GAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNV-KPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKE-LGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEM 323          
BLAST of CN192476 vs. ExPASy Swiss-Prot
Match: ADH_STAAS (Alcohol dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=adh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 50/211 (23.70%), Postives = 98/211 (46.45%), Query Frame = 1
Query:   94 GGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAK-AMGVKVTVISTSPSKKSEAIERLGADSFLVSRDQDEMQAAMGT-----MDGIIDTVSAVHPLMPLIGLLKSQGKLVLVGAPEKPLELPAFSLLMGRKIVGGSMIGGMKETQEMIDFAAKHNIRADIEVIPADYVNTALERL 708
            G  ++ ++    + V++PE     A + + CAG+T Y  ++   + KPG                ++AK  MG K+     +  K + A E LGAD+ + S+D D +   M       +D  + T  A  P    + ++K+  ++V VG P   + L    L++    V GS++G  ++ +E  +FAA++ +   +++   + +N   E +
Sbjct:  115 GAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNV-KPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKE-LGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEM 323          
BLAST of CN192476 vs. ExPASy Swiss-Prot
Match: ADH_STAAR (Alcohol dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=adh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 50/211 (23.70%), Postives = 98/211 (46.45%), Query Frame = 1
Query:   94 GGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAK-AMGVKVTVISTSPSKKSEAIERLGADSFLVSRDQDEMQAAMGT-----MDGIIDTVSAVHPLMPLIGLLKSQGKLVLVGAPEKPLELPAFSLLMGRKIVGGSMIGGMKETQEMIDFAAKHNIRADIEVIPADYVNTALERL 708
            G  ++ ++    + V++PE     A + + CAG+T Y  ++   + KPG                ++AK  MG K+     +  K + A E LGAD+ + S+D D +   M       +D  + T  A  P    + ++K+  ++V VG P   + L    L++    V GS++G  ++ +E  +FAA++ +   +++   + +N   E +
Sbjct:  115 GAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNV-KPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKE-LGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEM 323          
BLAST of CN192476 vs. ExPASy Swiss-Prot
Match: ADH_STAAN (Alcohol dehydrogenase OS=Staphylococcus aureus (strain N315) GN=adh PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 50/211 (23.70%), Postives = 98/211 (46.45%), Query Frame = 1
Query:   94 GGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAK-AMGVKVTVISTSPSKKSEAIERLGADSFLVSRDQDEMQAAMGT-----MDGIIDTVSAVHPLMPLIGLLKSQGKLVLVGAPEKPLELPAFSLLMGRKIVGGSMIGGMKETQEMIDFAAKHNIRADIEVIPADYVNTALERL 708
            G  ++ ++    + V++PE     A + + CAG+T Y  ++   + KPG                ++AK  MG K+     +  K + A E LGAD+ + S+D D +   M       +D  + T  A  P    + ++K+  ++V VG P   + L    L++    V GS++G  ++ +E  +FAA++ +   +++   + +N   E +
Sbjct:  115 GAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNV-KPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKE-LGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEM 323          
The following BLAST results are available for this feature:
BLAST of CN192476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
ADH1_EMENI1.856e-1327.81Alcohol dehydrogenase 1 OS=Emericella nidulans GN=... [more]
ADH2_CAEEL2.424e-1323.15Alcohol dehydrogenase 2 OS=Caenorhabditis elegans ... [more]
ADH1_KLUMA4.135e-1324.56Alcohol dehydrogenase 1 OS=Kluyveromyces marxianus... [more]
ADH_STAES9.211e-1323.11Alcohol dehydrogenase OS=Staphylococcus epidermidi... [more]
ADH4_KLULA9.211e-1326.78Alcohol dehydrogenase 4, mitochondrial OS=Kluyvero... [more]
ADH_STAEQ1.203e-1222.69Alcohol dehydrogenase OS=Staphylococcus epidermidi... [more]
ADH_STAAW1.571e-1223.70Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAS1.571e-1223.70Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAR1.571e-1223.70Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAN1.571e-1223.70Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0006P09_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192476 ID=CN192476; Name=CN192476; organism=Citrus sinensis; type=EST; length=713bp
GAGGGTGATAGCTGCGCCATTGATCTTGAGAACTACTGCCCCAAAGTTAT
AATGACCTATGCCAACAAGTACCATGATGGAACCATCACATACGGAGGCT
ACTCTGACATTATGGTTGCCGATGAGCACTTTGTGGTCCGTATTCCTGAA
GGCACACCACTTGACGCCACTGCCCCTCTCCTCTGTGCTGGTATCACAGT
CTACAGTCCGTTGAGATTCTATGGACTCGACAAGCCTGGTATGCATGTGG
GTGTTGTCGGCTTGGGCGGTCTAGGCCATGTCGCCGTCAAATTCGCAAAG
GCTATGGGGGTCAAGGTGACTGTGATCAGTACCTCCCCTAGCAAGAAGAG
TGAAGCCATTGAACGTCTTGGCGCTGATTCCTTTTTGGTCAGTCGTGATC
AAGATGAGATGCAGGCTGCCATGGGCACAATGGATGGTATTATCGATACA
GTATCTGCAGTTCACCCTCTAATGCCGTTGATTGGACTGTTGAAATCTCA
AGGAAAGCTTGTACTTGTTGGTGCACCAGAGAAGCCACTGGAGCTACCAG
CTTTCTCCCTGCTCATGGGGAGGAAGATAGTTGGTGGCAGCATGATTGGN
GGGATGAAGGAGACTCAAGAGATGATTGATTTTGCGGCAAAACACAACAT
CAGAGCTGATATTGAGGTCATACCGGCCGACTATGTGAACACAGCCCTGG
AGCGCCTTGCTAA
back to top