CN192474

Overview
NameCN192474
Unique NameCN192474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: Y5838_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 37/112 (33.04%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  459 NIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSVENPL 794
            ++     SDL  AT  F+ D+++  G  G+++KG +++          G L+ +KRL Q+  +  KE+  E+  LG + + NLV L+GYC+ +  RLL+YE+M  G + + L
Sbjct:  287 SVSKMKLSDLMKATEEFKKDNIIATGRTGTMYKGRLED----------GSLLMIKRL-QDSQRSEKEFDAEMKTLGSVKNRNLVPLLGYCVANKERLLMYEYMANGYLYDQL 387          
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = 3
Query:  462 IKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQ-EGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSVENPL 794
            +K F++ +L+ AT NF   +VLG+GGFG V+KG + +++           +AVKRL   E   G   +  E+  +    H NL++L+G+C     RLLVY FM   S+ + L
Sbjct:  275 LKRFAWRELQLATDNFSEKNVLGQGGFGKVYKGVLPDNT----------KVAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSLAHRL 376          
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: PSKR1_DAUCA (Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 35/104 (33.65%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  474 SYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSVE 785
            S  D+  +T +F   +++G GGFG V+K  + +          G  +A+KRL+ +  Q  +E+  E+  L +  HPNLV L+GYC   + +LL+Y +M  GS++
Sbjct:  732 SLDDILKSTSSFNQANIIGCGGFGLVYKATLPD----------GTKVAIKRLSGDTGQMDREFQAEVETLSRAQHPNLVHLLGYCNYKNDKLLIYSYMDNGSLD 825          
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: CRK3_ARATH (Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = 3
Query:  438 GEILQSSNIKN--FSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWL----TEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSVENPLF 797
            G +   +N  N  FSY +L+ AT  F   + LG+GG GSV+KG +            G  +AVKRL    F   K+W+     E+N + Q+ H NLVKL+G  +     LLVYE++   S+ + LF
Sbjct:  298 GSLFMLANKSNLCFSYENLERATDYFSDKNKLGQGGSGSVYKGVLTN----------GKTVAVKRL----FFNTKQWVDHFFNEVNLISQVDHKNLVKLLGCSITGPESLLVYEYIANQSLHDYLF 409          
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: ACCR2_ARATH (Serine/threonine-protein kinase-like protein CCR2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = 3
Query:  465 KNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGF--QGHKEWLTEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSVENPL 794
            K F  S+LK AT  F+  + LG G FG V+K  + +          G+ +AVKR N        ++ + +E+  L ++ H N+V L+GYC +   RLLVYE+MP G++ + L
Sbjct:  505 KIFRLSELKDATHGFKEFNELGRGSFGFVYKAVLSD----------GIHVAVKRANAATIIHSNNRGFESELEILCKIRHNNIVNLLGYCSEMGERLLVYEYMPHGTLHDHL 606          
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.700e-11
Identity = 36/109 (33.03%), Postives = 62/109 (56.88%), Query Frame = 3
Query:  471 FSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSVENPLF 797
            FS+ ++K+ATRNF+   V+G G FG+V++G + +          G  +AVK        G   ++ E++ L Q+ H NLV   G+C +   ++LVYE++  GS+ + L+
Sbjct:  596 FSHKEIKSATRNFK--EVIGRGSFGAVYRGKLPD----------GKQVAVKVRFDRTQLGADSFINEVHLLSQIRHQNLVSFEGFCYEPKRQILVYEYLSGGSLADHLY 692          
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: WAKLK_ARATH (Putative wall-associated receptor kinase-like 11 OS=Arabidopsis thaliana GN=WAKL11 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  471 FSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSV 782
            FS  +L+ AT NF    +LG+GG G+V+KG + +          G  +AVK+         +E++ E+  L Q++H ++VKL+G CL+ +   LVYEF+P G++
Sbjct:  439 FSSRELEKATDNFSESRILGQGGQGTVYKGMLVD----------GRTVAVKKSKVVDEDKLEEFINEVVILSQINHRHVVKLLGCCLETEVPTLVYEFIPNGNL 532          
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: IRAK4_HUMAN (Interleukin-1 receptor-associated kinase 4 OS=Homo sapiens GN=IRAK4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 45/130 (34.62%), Postives = 70/130 (53.85%), Query Frame = 3
Query:  417 PQTPRSEGEILQSSNIK--NFSYSDLKTATRNF--RPDSV----LGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSV 782
            P +   E + L+ S+ +  +FS+ +LK  T NF  RP SV    +GEGGFG V+KG+V+  ++   +    + I  + L Q+  Q       EI  + +  H NLV+L+G+    D   LVY +MP GS+
Sbjct:  148 PDSSSPENKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQ-------EIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSL 270          
The following BLAST results are available for this feature:
BLAST of CN192474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
Y5838_ARATH3.598e-1133.04Probably inactive leucine-rich repeat receptor-lik... [more]
Y5129_ARATH3.598e-1135.71Probable LRR receptor-like serine/threonine-protei... [more]
PSKR1_DAUCA3.598e-1133.65Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR... [more]
CRK3_ARATH3.598e-1136.51Cysteine-rich receptor-like protein kinase 3 OS=Ar... [more]
ACCR2_ARATH3.598e-1135.71Serine/threonine-protein kinase-like protein CCR2 ... [more]
Y5487_ARATH4.700e-1133.03Probable LRR receptor-like serine/threonine-protei... [more]
WAKLK_ARATH6.138e-1135.58Putative wall-associated receptor kinase-like 11 O... [more]
IRAK4_HUMAN8.016e-1134.62Interleukin-1 receptor-associated kinase 4 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006P08_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192474 ID=CN192474; Name=CN192474; organism=Citrus sinensis; type=EST; length=798bp
CCCCCGCTTTTACAAAAAGAGGGGAAAAGCAAACAAGTAATCAACAATAG
CAAAGACCTTTTTTTTTTTTTTTAACTTCTCATTTGGGTGCTTCTTAATC
CAGAATTGAACCCAAATCCCACCCTAAAAGTGAAAAAGATCACACCCAAA
ATCTATTTGTGATCATTTGTTGAGTTGGAGTTCTGGGTTCTGTTTGTTTC
ATTGAGGATAGAAAGAGAGAGTACAAAACAAAACCATAAAGGAAAAAAAT
TTCTTTAAATAAGATCTGGGTATTTTGTTTTGTCTGGATGGGAGCTTGCT
GTAGCAACAGGATTAAGGCTGAGACTCCTTCTCATACTGATGTGAATTCA
AAATATTCTAGCAGAGATGTAAAGAGTTTAAGCAGTTCCAGTGGTAAGGC
CTCTTCATTTTCCCTGCCTCAAACACCACGGAGTGAGGGTGAGATCTTGC
AGTCATCAAATATAAAGAATTTCAGCTACAGCGACCTTAAGACAGCTACC
AGAAACTTCCGCCCTGATAGTGTTTTGGGAGAAGGCGGCTTTGGTTCTGT
CTTCAAAGGATGGGTTGACGAGCATTCACTTACTTCTACAAGGCCTGGTA
CTGGCATGTTAATTGCTGTGAAGAGGCTTAACCAAGAAGGTTTCCAGGGT
CACAAGGAATGGCTAACAGAAATTAACTATCTTGGGCAGTTGCATCATCC
TAATCTTGTGAAGTTGGTTGGTTACTGTTTAAAGGATGATCACCGGCTTC
TGGTTTATGAGTTCATGCCTCGAGGTAGCGTGGAAAATCCTCTATTTA
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