CX302372

Overview
NameCX302372
Unique NameCX302372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302372 vs. ExPASy Swiss-Prot
Match: VATL_TORMA (V-type proton ATPase 16 kDa proteolipid subunit OS=Torpedo marmorata PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 39/96 (40.62%), Postives = 51/96 (53.12%), Query Frame = 2
Query:    2 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 289
            G++ IYGL++AV+I+   N   +   LF  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   62 GIIAIYGLVVAVLIA---NSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 154          
BLAST of CX302372 vs. ExPASy Swiss-Prot
Match: VATL2_YEAST (V-type proton ATPase subunit c' OS=Saccharomyces cerevisiae GN=VMA11 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 2
Query:    2 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQ 298
            G+L IYGL++AV+I+  ++P  + Y LF+G+                  AIG+VGD GVR    QP+LFVG+            YG+IV +IL++R  +
Sbjct:   67 GILAIYGLVVAVLIAGNLSP-TEDYTLFNGFMHLSCGLCVGFACLSSGYAIGMVGDVGVRKYMHQPRLFVGIVLILIFSEVLGLYGMIVALILNTRGSE 164          
BLAST of CX302372 vs. ExPASy Swiss-Prot
Match: VATL1_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 1 OS=Caenorhabditis elegans GN=vha-1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = 2
Query:    2 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 286
            G++ IYGL++AVI+S  + P   +Y + + +                  AIGI GDAGVRA +QQP++FVGM            YG+IV +IL +
Sbjct:   74 GIVAIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALSQQPRMFVGMILILIFAEVLGLYGMIVALILGA 168          
BLAST of CX302372 vs. ExPASy Swiss-Prot
Match: VATL_SHEEP (V-type proton ATPase 16 kDa proteolipid subunit OS=Ovis aries GN=ATP6V0C PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 38/96 (39.58%), Postives = 51/96 (53.12%), Query Frame = 2
Query:    2 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 289
            G++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   63 GIIAIYGLVVAVLIANSLNDGIS---LYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of CX302372 vs. ExPASy Swiss-Prot
Match: VATL_BOVIN (V-type proton ATPase 16 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 38/96 (39.58%), Postives = 51/96 (53.12%), Query Frame = 2
Query:    2 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 289
            G++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   63 GIIAIYGLVVAVLIANSLNDGIS---LYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of CX302372 vs. ExPASy Swiss-Prot
Match: VATL2_CANGA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Candida glabrata GN=VMA11 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 2
Query:    2 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQ 298
            G+L IYGL++AV+I+  ++P  + Y LF+G+                  AIGIVGD GVR    QP+LFVG+            YG+I+ +IL+++  +
Sbjct:   67 GILAIYGLVVAVLIAGNLSP-TEEYTLFNGFMHLSCGLCVGFACLSSGYAIGIVGDVGVRKYMHQPRLFVGIVLILIFSEVLGLYGMIIALILNTKGSE 164          
The following BLAST results are available for this feature:
BLAST of CX302372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
VATL_TORMA3.633e-1140.63V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_YEAST3.633e-1136.36V-type proton ATPase subunit c' OS=Saccharomyces c... [more]
VATL1_CAEEL3.633e-1136.84V-type proton ATPase 16 kDa proteolipid subunit 1 ... [more]
VATL_SHEEP4.745e-1139.58V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BOVIN4.745e-1139.58V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_CANGA4.745e-1135.35V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]

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Properties
Property NameValue
Genbank descriptionC08020A09SK PhyRootSw1 Citrus sinensis cDNA clone C08020A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302372 ID=CX302372; Name=CX302372; organism=Citrus sinensis; type=EST; length=685bp
GGGAGTTTTGGGTATTTACGGTTTGATTATTGCTGTTATTATTAGTACCG
GAATTAACCCTAAGGCCAAATCTTATTACCTTTTCGATGGCTACGCGCAT
CTCTCTTCTGGCCTCGCTTGTGGCCTTGCTGGTCTCTCCGCTGGTATGGC
AATTGGGATCGTCGGTGATGCTGGTGTCAGAGCTAATGCTCAACAGCCGA
AGCTTTTCGTTGGGATGATCCTCATTCTGATCTTTGCCGAAGCGCTGGCA
CTTTATGGACTTATTGTTGGTATCATTCTTTCTTCTCGTGCTGGTCAGTC
AAGAGCAGACTAGAAGAGGATGCTTTGCTTGGTGGTTATTTGGCCTGTTG
TGTTCCATTAAGAAGAATTCAGTTCATATTGCATGTGACGGGAGGTGGTA
GTCTGCGTTGGGTAGTGTTTTTCTTTTTCGACTTAAAAAATTATTGTCTG
TGGTGTGATTGTTCAACCAGATTGATTCGATTTTTAATGGTATGGAGAAT
GTAGAATTAGGAATTAGTTTCTCCCATTAATAAAGTCATGCTGTCATTGT
TTAGTTTAATGTTAAAATGCTGTATTTTTTGGGATCCATTTATAGGTTGT
TGATACCCTAATAATCGCTTGTAATGTTTTCTGAGACTCTCTTTACTTGA
TCTCCAGTTTTGTAAAGCCCAAATTGTGTTGTGGG
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