CN192453

Overview
NameCN192453
Unique NameCN192453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192453 vs. ExPASy Swiss-Prot
Match: MPV17_MOUSE (Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.509e-11
Identity = 41/145 (28.28%), Postives = 63/145 (43.45%), Query Frame = -1
Query:  309 LADLSSQTIASS---ESYDLVRTLRMGGYGMLILGPTLHFWFNFVSKLFPKQDLVATLKKMAMGQTIYGPIMTVVFLSLNASLQGESGEEIVARLKRDLLPTMFKGVMYWPVCDFITFRFIPVHLQPLVSNSFSYLWTIYLTYTA 734
            + D+ SQ +      + +   RTL M   G   +GP +  W+  +  L P    V  LKKM + Q  + P     FL L   L G S ++  A+LKRD    +      WP      F  +P+H +  V    + +W  YL++ A
Sbjct:   29 VGDMISQQLVERRGLQQHQAGRTLTMVSLGCGFVGPVVGGWYKVLDHLIPGTTKVHALKKMLLDQGGFAPCFLGCFLPLVGILNGMSAQDNWAKLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAIVWNSYLSWKA 173          
BLAST of CN192453 vs. ExPASy Swiss-Prot
Match: MPV17_HUMAN (Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.509e-11
Identity = 40/145 (27.59%), Postives = 64/145 (44.14%), Query Frame = -1
Query:  309 LADLSSQTIASS---ESYDLVRTLRMGGYGMLILGPTLHFWFNFVSKLFPKQDLVATLKKMAMGQTIYGPIMTVVFLSLNASLQGESGEEIVARLKRDLLPTMFKGVMYWPVCDFITFRFIPVHLQPLVSNSFSYLWTIYLTYTA 734
            L D+ SQ +      + +   RTL M   G   +GP +  W+  + +  P    V  LKKM + Q  + P     FL L  +L G S ++  A+L+RD    +      WP      F  +P+H +  V    + +W  YL++ A
Sbjct:   29 LGDIISQQLVERRGLQEHQRGRTLTMVSLGCGFVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNWAKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKA 173          
BLAST of CN192453 vs. ExPASy Swiss-Prot
Match: SYM1_YARLI (Protein SYM1 OS=Yarrowia lipolytica GN=SYM1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 39/141 (27.66%), Postives = 63/141 (44.68%), Query Frame = -1
Query:  315 LLADLSSQTIASSESYDLVRTLRMGGYGMLILGPTLHFWFNFVSKLFPKQDLVATLKKMAMGQTIYGPIMTVVFLSLNASLQGESGEEIVARLKRDLLPTMFKGVMYWPVCDFITFRFIPVHLQPLVSNSFSYLWTIYLTY 737
            ++ D  SQ   S + Y+ +RT R G Y      P +  WF F+      Q  +  + K+A+ Q ++ P     + S+   L+G+S + I   LK     T+  G M WP      F  +P + + L SN    +W  +L Y
Sbjct:   25 MIGDCVSQRYFSDKPYEPMRTARAGIYACAF-APAMTAWFRFLG-----QQQLPVIAKVAIDQAVFAPSSIGYYFSVMGLLEGKSPDTIWQSLKNQYWDTLKCGWMIWPAFQLFNFGIVPPNFRVLASNCCGLVWNTFLAY 159          
The following BLAST results are available for this feature:
BLAST of CN192453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MPV17_MOUSE2.509e-1128.28Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=2 SV=1[more]
MPV17_HUMAN2.509e-1127.59Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1[more]
SYM1_YARLI9.533e-1127.66Protein SYM1 OS=Yarrowia lipolytica GN=SYM1 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006O15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192453 ID=CN192453; Name=CN192453; organism=Citrus sinensis; type=EST; length=752bp
CTTTTTCGTGTGATCAGAGCAGTTTTTTACTGTGGAAATTGCCCACTAAA
ACAATGTCATCAACCCACTACTTTACAACCTCTGATATGTTGTCCAATTG
CATTATCTAGTAAATAATACCACTAAGAGAAAAGAACAAAATATTAATGG
GCGCTGCTTGGTCTACATGAGCAATGGATCAAGTTCATAGCAGTTCTGCG
TCAACCATCAGCTGAGAGTATCTAAGGTAGATCTTGGGCTTGAACGTGAG
ATGGATAGAGGGAACACTGAACCAATCAGCTTGCAGTTGTGACAGCTTTT
TCTAGACTCGCCGTATACGTCAGATAGATAGTCCATAGATATGAAAATGA
ATTGCTCACCAATGGCTGCAAATGGACAGGGATGAATCTGAATGTGATAA
AATCACATACAGGCCAGTACATGACACCCTTGAACATGGTAGGGAGCAAG
TCTCGTTTTAATCGAGCAACAATCTCTTCTCCACTTTCACCTTGTAAACT
TGCATTCAGTGATAAGAACACAACAGTCATAATTGGTCCATAAATTGTCT
GCCCCATTGCCATCTTCTTCAATGTAGCAACCAGATCTTGCTTCGGAAAC
AATTTTGACACAAAATTGAACCAAAAGTGCAATGTGGGACCTAAAATTAA
CATCCCATATCCACCCATCCGTAATGTCCTCACCAGATCATAAGATTCTG
AAGATGCAATAGTCTGCGATGACAAATCAGCCAGCAATATAAATAAGAGA
GC
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