CN192446

Overview
NameCN192446
Unique NameCN192446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_POPTR (S-adenosylmethionine synthetase 2 OS=Populus trichocarpa GN=METK2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.001e-29
Identity = 63/79 (79.75%), Postives = 66/79 (83.54%), Query Frame = -1
Query:  347 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE 583
            P SV        KIPDKEIL IVKE FDFRPGMIAI+LDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK EKPQ+
Sbjct:  315 PLSVFVDTYGTGKIPDKEILNIVKEKFDFRPGMIAISLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKSEKPQQ 393          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_ARATH (S-adenosylmethionine synthetase 1 OS=Arabidopsis thaliana GN=SAM1 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.001e-29
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = -1
Query:  350 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 583
            P SV     E   IPDKEIL+IVKE+FDFRPGM+ INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK++KPQ
Sbjct:  315 PLSVFVDTYETGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQ 392          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK3_ACTCH (S-adenosylmethionine synthetase 3 (Fragment) OS=Actinidia chinensis GN=SAM3 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.308e-29
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = -1
Query:  347 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE 583
            P SV        KIPDKEIL+IVKE+FDFRPGMIAI+LDLKRGGN RFLKTAAYGHFGR+D DFTWEVVKPLK+EKPQ+
Sbjct:  282 PLSVFVDTYGTGKIPDKEILKIVKESFDFRPGMIAIHLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKWEKPQD 360          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_ELAUM (S-adenosylmethionine synthetase 1 OS=Elaeagnus umbellata GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.308e-29
Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = -1
Query:  350 KIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 547
            +IPDKEIL IVKENFDFRPGMI INLDLKRGGN RFLKTA YGHFGR+DPDFTWE+VKPLK+EKPQ
Sbjct:  327 QIPDKEILNIVKENFDFRPGMITINLDLKRGGNGRFLKTAGYGHFGRDDPDFTWEIVKPLKWEKPQ 392          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_BRAJU (S-adenosylmethionine synthetase 1 OS=Brassica juncea GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.308e-29
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = -1
Query:  350 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 583
            PFSV         IPDKEIL+IVKE+FDFRPGM+ INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK++KPQ
Sbjct:  315 PFSVFVDTYGTGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQ 392          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK_LITCN (S-adenosylmethionine synthetase OS=Litchi chinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.708e-29
Identity = 58/66 (87.88%), Postives = 64/66 (96.97%), Query Frame = -1
Query:  350 KIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 547
            KIPD+EIL+IVKENFDFRPGMI++NLDLKRGGN RFLKTAAYGHFGREDPDFTWEVVKPLK++K Q
Sbjct:  327 KIPDREILKIVKENFDFRPGMISVNLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWDKVQ 392          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_CATRO (S-adenosylmethionine synthetase 1 OS=Catharanthus roseus GN=SAMS1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.708e-29
Identity = 62/76 (81.58%), Postives = 66/76 (86.84%), Query Frame = -1
Query:  356 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 583
            P SV        KIPDKEIL+IVKENFDFRPGMIAINLDLKRGG+ RFLKTAAYGHFGR+DPDFTWEVVKPLK+EK
Sbjct:  315 PLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGSGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 390          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_SOLLC (S-adenosylmethionine synthetase 2 OS=Solanum lycopersicum GN=SAM2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.231e-29
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = -1
Query:  350 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 583
            P SV        KIPDKEIL IVKENFDFRPGMI+INLDL RGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK++KP+
Sbjct:  315 PLSVFVDTYGTGKIPDKEILNIVKENFDFRPGMISINLDLLRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPE 392          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_DAUCA (S-adenosylmethionine synthetase 2 OS=Daucus carota GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.914e-29
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = -1
Query:  350 IPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 544
            IPDKEIL+IVKE FDFRPGMIAINLDLKRGGN+RFLKTAAYGHFGR+D DFTWEVVKPLK+EKPQ
Sbjct:  328 IPDKEILKIVKETFDFRPGMIAINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKWEKPQ 392          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_POPTR (S-adenosylmethionine synthetase 1 OS=Populus trichocarpa GN=METK1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.914e-29
Identity = 63/78 (80.77%), Postives = 67/78 (85.90%), Query Frame = -1
Query:  350 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 583
            P SV        KIPDKEIL+IVKENFDFRPGM+ INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK+EKPQ
Sbjct:  315 PLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMMTINLDLKRGGN-RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 391          
The following BLAST results are available for this feature:
BLAST of CN192446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
METK2_POPTR1.001e-2979.75S-adenosylmethionine synthetase 2 OS=Populus trich... [more]
METK1_ARATH1.001e-2978.21S-adenosylmethionine synthetase 1 OS=Arabidopsis t... [more]
METK3_ACTCH1.308e-2978.48S-adenosylmethionine synthetase 3 (Fragment) OS=Ac... [more]
METK1_ELAUM1.308e-2987.88S-adenosylmethionine synthetase 1 OS=Elaeagnus umb... [more]
METK1_BRAJU1.308e-2978.21S-adenosylmethionine synthetase 1 OS=Brassica junc... [more]
METK_LITCN1.708e-2987.88S-adenosylmethionine synthetase OS=Litchi chinensi... [more]
METK1_CATRO1.708e-2981.58S-adenosylmethionine synthetase 1 OS=Catharanthus ... [more]
METK2_SOLLC2.231e-2978.21S-adenosylmethionine synthetase 2 OS=Solanum lycop... [more]
METK2_DAUCA2.914e-2990.77S-adenosylmethionine synthetase 2 OS=Daucus carota... [more]
METK1_POPTR2.914e-2980.77S-adenosylmethionine synthetase 1 OS=Populus trich... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006O11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192446 ID=CN192446; Name=CN192446; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTAGATGAATACTCATAATTTGATTATGACCAAAA
AAATGCATTAATAGTACATTAACAAATAACAATGTTTCTCCACAAACGAG
CTCTTCTTCCATCTCTATTTCTCTTCCTAGCATATCTCATACAGGCAACT
TCTCTGTAATTCTTTCATCGACTATGACTCAATTAGACCACATATATCTT
TCTATTATGGCAAAGATAATACAAATTTATTTTTTAAAAAAAAGGCCAAG
ACCAAGAGAGAAAAAAGACATAATCTGACAGGCAGACAAAAGAACAAGTA
AATTATTGAGTTCAAACAAAGAATGAAACTGCATACTTAAATTCTACTCT
TGGGGTTTCTCATACTTGAGGGGCTTCACCACCTCCCATGTGAAGTCAGG
ATCCTCCCTTCCAAAATGCCCATATGCAGCAGTCTTCAAAAACCTGCTAT
TTCCTCCCCTCTTGAGATCCAAGTTAATGGCAATCATTCCAGGCCTGAAA
TCAAAGTTCTCCTTCACAATCCTCAGGATCTCCTTGTCCGGAATCTTTTC
CAGTTCGATAAGTGGTCAACAAACACTGAAAGGGGCTCTCCT
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