CN192446

Overview
NameCN192446
Unique NameCN192446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_ORYSJ (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. japonica GN=SAM1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.914e-29
Identity = 60/77 (77.92%), Postives = 66/77 (85.71%), Query Frame = -1
Query:  353 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKP 583
            P SV        +IPDKEIL+IVKENFDFRPGMI INLDLK+GGN R+LKTAAYGHFGR+DPDFTWEVVKPLK+EKP
Sbjct:  318 PLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKP 394          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_ORYSI (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. indica GN=SAM1 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.914e-29
Identity = 60/77 (77.92%), Postives = 66/77 (85.71%), Query Frame = -1
Query:  353 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKP 583
            P SV        +IPDKEIL+IVKENFDFRPGMI INLDLK+GGN R+LKTAAYGHFGR+DPDFTWEVVKPLK+EKP
Sbjct:  318 PLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKP 394          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK_SOLBR (S-adenosylmethionine synthetase OS=Solanum brevidens GN=SAMS PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.806e-29
Identity = 60/79 (75.95%), Postives = 67/79 (84.81%), Query Frame = -1
Query:  347 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE 583
            P SV        KIPD+EIL+IVKENFDFRPGM++INLDLKRGGN RFLKTAAYGHFGR+D DFTWEVVKPLK+E PQ+
Sbjct:  315 PLSVFVDTYGTGKIPDREILKIVKENFDFRPGMMSINLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKWENPQD 393          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK_BRARP (S-adenosylmethionine synthetase OS=Brassica rapa subsp. pekinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.970e-29
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = -1
Query:  350 IPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 544
            IPDKEIL+IVKE+FDFRPGM+ INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK++KPQ
Sbjct:  328 IPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQ 392          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK5_BRAJU (S-adenosylmethionine synthetase 5 OS=Brassica juncea GN=MSAMS5 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.970e-29
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = -1
Query:  350 IPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 544
            IPDKEIL+IVKE+FDFRPGM+ INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK++KPQ
Sbjct:  328 IPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQ 392          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK3_BRAJU (S-adenosylmethionine synthetase 3 OS=Brassica juncea GN=MSAMS3 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.970e-29
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = -1
Query:  350 IPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 544
            IPDKEIL+IVKE+FDFRPGM+ INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK++KPQ
Sbjct:  328 IPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQ 392          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_PETCR (S-adenosylmethionine synthetase 1 (Fragment) OS=Petroselinum crispum GN=SMS-1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.970e-29
Identity = 61/76 (80.26%), Postives = 65/76 (85.53%), Query Frame = -1
Query:  356 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 583
            P SV        KIPD+EIL+IVKE FDFRPGMI+INLDLKRGGN RFLKTAAYGHFGREDPDFTWEVVKPLK+EK
Sbjct:  158 PLSVFVDTYGTGKIPDREILKIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 233          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_PETCR (S-adenosylmethionine synthetase 2 (Fragment) OS=Petroselinum crispum GN=SMS-2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.478e-29
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = -1
Query:  356 KIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 547
            KIPD+EIL+IVKE FDFRPGMI+INLDLKRGGN RFLKTAAYGHFGREDPDFTWEVVKPLK+EK
Sbjct:   81 KIPDREILQIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 144          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK3_PETHY (S-adenosylmethionine synthetase 3 OS=Petunia hybrida GN=SAM3 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.107e-28
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = -1
Query:  347 IPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE 544
            IPDKEIL+IVKENFDFRPGMIAINLDLKRGGN RFLKTAAYGHFGR+D DFTWEVVKPLK EK Q+
Sbjct:  328 IPDKEILKIVKENFDFRPGMIAINLDLKRGGNGRFLKTAAYGHFGRDDTDFTWEVVKPLKCEKAQD 393          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK_GOSHI (S-adenosylmethionine synthetase OS=Gossypium hirsutum GN=SAMS PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.446e-28
Identity = 61/76 (80.26%), Postives = 65/76 (85.53%), Query Frame = -1
Query:  356 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 583
            P SV        KIPDKEIL+IVKE FDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGR+D DFTWEVVKPLK++K
Sbjct:  315 PLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRDDTDFTWEVVKPLKWDK 390          
The following BLAST results are available for this feature:
BLAST of CN192446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
METK1_ORYSJ2.914e-2977.92S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK1_ORYSI2.914e-2977.92S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK_SOLBR3.806e-2975.95S-adenosylmethionine synthetase OS=Solanum brevide... [more]
METK_BRARP4.970e-2987.69S-adenosylmethionine synthetase OS=Brassica rapa s... [more]
METK5_BRAJU4.970e-2987.69S-adenosylmethionine synthetase 5 OS=Brassica junc... [more]
METK3_BRAJU4.970e-2987.69S-adenosylmethionine synthetase 3 OS=Brassica junc... [more]
METK1_PETCR4.970e-2980.26S-adenosylmethionine synthetase 1 (Fragment) OS=Pe... [more]
METK2_PETCR8.478e-2990.63S-adenosylmethionine synthetase 2 (Fragment) OS=Pe... [more]
METK3_PETHY1.107e-2889.39S-adenosylmethionine synthetase 3 OS=Petunia hybri... [more]
METK_GOSHI1.446e-2880.26S-adenosylmethionine synthetase OS=Gossypium hirsu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006O11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192446 ID=CN192446; Name=CN192446; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTAGATGAATACTCATAATTTGATTATGACCAAAA
AAATGCATTAATAGTACATTAACAAATAACAATGTTTCTCCACAAACGAG
CTCTTCTTCCATCTCTATTTCTCTTCCTAGCATATCTCATACAGGCAACT
TCTCTGTAATTCTTTCATCGACTATGACTCAATTAGACCACATATATCTT
TCTATTATGGCAAAGATAATACAAATTTATTTTTTAAAAAAAAGGCCAAG
ACCAAGAGAGAAAAAAGACATAATCTGACAGGCAGACAAAAGAACAAGTA
AATTATTGAGTTCAAACAAAGAATGAAACTGCATACTTAAATTCTACTCT
TGGGGTTTCTCATACTTGAGGGGCTTCACCACCTCCCATGTGAAGTCAGG
ATCCTCCCTTCCAAAATGCCCATATGCAGCAGTCTTCAAAAACCTGCTAT
TTCCTCCCCTCTTGAGATCCAAGTTAATGGCAATCATTCCAGGCCTGAAA
TCAAAGTTCTCCTTCACAATCCTCAGGATCTCCTTGTCCGGAATCTTTTC
CAGTTCGATAAGTGGTCAACAAACACTGAAAGGGGCTCTCCT
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