CN192446

Overview
NameCN192446
Unique NameCN192446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK5_POPTR (S-adenosylmethionine synthetase 5 OS=Populus trichocarpa GN=METK5 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.446e-28
Identity = 60/75 (80.00%), Postives = 66/75 (88.00%), Query Frame = -1
Query:  359 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYE 583
            P SV        KIPDKEIL+IVKE+FDFRPGMI+INLDLKRGGNSRFLKTAAYGHFGR+DPDFTWEVVKPLK++
Sbjct:  316 PLSVFVDTYGTGKIPDKEILQIVKESFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK3_POPTR (S-adenosylmethionine synthetase 3 OS=Populus trichocarpa GN=METK3 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.446e-28
Identity = 60/75 (80.00%), Postives = 66/75 (88.00%), Query Frame = -1
Query:  359 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYE 583
            P SV        KIPDKEIL+IVKE+FDFRPGMI+INLDLKRGGNSRFLKTAAYGHFGR+DPDFTWEVVKPLK++
Sbjct:  316 PLSVFVDTYGTGKIPDKEILQIVKESFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK_POPDE (S-adenosylmethionine synthetase OS=Populus deltoides GN=METK PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.889e-28
Identity = 60/75 (80.00%), Postives = 65/75 (86.67%), Query Frame = -1
Query:  359 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYE 583
            P SV        KIPDKEIL+IVKE FDFRPGMI+INLDLKRGGNSRFLKTAAYGHFGR+DPDFTWEVVKPLK++
Sbjct:  316 PLSVFVDTYGTGKIPDKEILQIVKERFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK_DENCR (S-adenosylmethionine synthetase OS=Dendrobium crumenatum GN=SAMS PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.889e-28
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = -1
Query:  353 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKP 583
            P SV        KIPDKEIL+IVKENFDFRPGMI INLDLKRGGN RF+KTAAYGHFGR+DPDFTWEVVKPLK++KP
Sbjct:  318 PLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMITINLDLKRGGN-RFIKTAAYGHFGRDDPDFTWEVVKPLKWDKP 393          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK3_ORYSJ (S-adenosylmethionine synthetase 3 OS=Oryza sativa subsp. japonica GN=METK3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.889e-28
Identity = 60/77 (77.92%), Postives = 64/77 (83.12%), Query Frame = -1
Query:  353 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKP 583
            P SV        KIPD+EILRIV ENFDFRPGMI INLDL RGGN R+LKTAAYGHFGREDPDFTWEVVKPLK+E+P
Sbjct:  318 PLSVFVDTYGTGKIPDREILRIVTENFDFRPGMIIINLDLMRGGNGRYLKTAAYGHFGREDPDFTWEVVKPLKWEEP 394          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_ORYSJ (S-adenosylmethionine synthetase 2 OS=Oryza sativa subsp. japonica GN=SAM2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.889e-28
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = -1
Query:  356 KIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 547
            KIPDKEIL+IVKENFDFRPGM+ INLDLKRGGN RF+KTAAYGHFGREDPDFTWEVVKPLKYEK
Sbjct:  329 KIPDKEILKIVKENFDFRPGMMTINLDLKRGGN-RFIKTAAYGHFGREDPDFTWEVVKPLKYEK 391          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_SUASA (S-adenosylmethionine synthetase 2 OS=Suaeda salsa GN=METK2 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.467e-28
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = -1
Query:  356 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 583
            P SV        KIPDK+IL+IVKENFDFRPGMI+INLDLKRGGN+RF KTAAYGHFGR+DPDFTWE VKPLK+EK
Sbjct:  315 PLSVFVDTYGTGKIPDKDILKIVKENFDFRPGMISINLDLKRGGNARFQKTAAYGHFGRDDPDFTWETVKPLKWEK 390          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_ARATH (S-adenosylmethionine synthetase 2 OS=Arabidopsis thaliana GN=SAM2 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.222e-28
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = -1
Query:  350 IPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 544
            IPDKEIL+IVKE FDFRPGM+ INLDLKRGGN RF KTAAYGHFGR+DPDFTWEVVKPLK++KPQ
Sbjct:  328 IPDKEILKIVKETFDFRPGMMTINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEVVKPLKWDKPQ 392          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_PEA (S-adenosylmethionine synthetase 1 (Fragment) OS=Pisum sativum GN=SAMS1 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.222e-28
Identity = 60/76 (78.95%), Postives = 64/76 (84.21%), Query Frame = -1
Query:  356 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 583
            P SV        KIPD+EIL+IVKE FDFRPGMI+INLDL RGGN RFLKTAAYGHFGREDPDFTWEVVKPLK+EK
Sbjct:  290 PLSVFVDTYGTGKIPDREILKIVKETFDFRPGMISINLDLLRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 365          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_BETVU (S-adenosylmethionine synthetase 2 OS=Beta vulgaris GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.495e-28
Identity = 59/76 (77.63%), Postives = 64/76 (84.21%), Query Frame = -1
Query:  356 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 583
            P SV        KIPDKEIL+IVKE FDFRPGM++INLDLKRGGN RF KTAAYGHFGR+DPDFTWEVVKPLK+EK
Sbjct:  315 PLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMMSINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEVVKPLKWEK 390          
The following BLAST results are available for this feature:
BLAST of CN192446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
METK5_POPTR1.446e-2880.00S-adenosylmethionine synthetase 5 OS=Populus trich... [more]
METK3_POPTR1.446e-2880.00S-adenosylmethionine synthetase 3 OS=Populus trich... [more]
METK_POPDE1.889e-2880.00S-adenosylmethionine synthetase OS=Populus deltoid... [more]
METK_DENCR1.889e-2879.22S-adenosylmethionine synthetase OS=Dendrobium crum... [more]
METK3_ORYSJ1.889e-2877.92S-adenosylmethionine synthetase 3 OS=Oryza sativa ... [more]
METK2_ORYSJ1.889e-2892.19S-adenosylmethionine synthetase 2 OS=Oryza sativa ... [more]
METK2_SUASA2.467e-2877.63S-adenosylmethionine synthetase 2 OS=Suaeda salsa ... [more]
METK2_ARATH3.222e-2886.15S-adenosylmethionine synthetase 2 OS=Arabidopsis t... [more]
METK1_PEA3.222e-2878.95S-adenosylmethionine synthetase 1 (Fragment) OS=Pi... [more]
METK2_BETVU5.495e-2877.63S-adenosylmethionine synthetase 2 OS=Beta vulgaris... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006O11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192446 ID=CN192446; Name=CN192446; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTAGATGAATACTCATAATTTGATTATGACCAAAA
AAATGCATTAATAGTACATTAACAAATAACAATGTTTCTCCACAAACGAG
CTCTTCTTCCATCTCTATTTCTCTTCCTAGCATATCTCATACAGGCAACT
TCTCTGTAATTCTTTCATCGACTATGACTCAATTAGACCACATATATCTT
TCTATTATGGCAAAGATAATACAAATTTATTTTTTAAAAAAAAGGCCAAG
ACCAAGAGAGAAAAAAGACATAATCTGACAGGCAGACAAAAGAACAAGTA
AATTATTGAGTTCAAACAAAGAATGAAACTGCATACTTAAATTCTACTCT
TGGGGTTTCTCATACTTGAGGGGCTTCACCACCTCCCATGTGAAGTCAGG
ATCCTCCCTTCCAAAATGCCCATATGCAGCAGTCTTCAAAAACCTGCTAT
TTCCTCCCCTCTTGAGATCCAAGTTAATGGCAATCATTCCAGGCCTGAAA
TCAAAGTTCTCCTTCACAATCCTCAGGATCTCCTTGTCCGGAATCTTTTC
CAGTTCGATAAGTGGTCAACAAACACTGAAAGGGGCTCTCCT
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