CN192446

Overview
NameCN192446
Unique NameCN192446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK_WHEAT (S-adenosylmethionine synthetase OS=Triticum aestivum GN=SAMS PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 60/77 (77.92%), Postives = 62/77 (80.52%), Query Frame = -1
Query:  353 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKP 583
            P SV        KIPDKEIL IVKENFDFRPGMI INLDLKRGG  R+LKTAAYGHFGRE  DFTWEVVKPLK+EKP
Sbjct:  318 PLSVFVDTYGTGKIPDKEILEIVKENFDFRPGMIIINLDLKRGGKGRYLKTAAYGHFGREGADFTWEVVKPLKWEKP 394          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK_CARPA (S-adenosylmethionine synthetase OS=Carica papaya GN=SAMS PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 59/71 (83.10%), Postives = 61/71 (85.92%), Query Frame = -1
Query:  371 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKP 583
            P SV        KIPDKEIL+IVKENFDFRPGMI INLDLKRGGNSRFLKTAAYGHFGR+DPDFTWEVVKP
Sbjct:  315 PLSVYVDTYGTGKIPDKEILKIVKENFDFRPGMITINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKP 385          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK4_HORVU (S-adenosylmethionine synthetase 4 OS=Hordeum vulgare GN=SAM4 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.088e-27
Identity = 59/77 (76.62%), Postives = 63/77 (81.82%), Query Frame = -1
Query:  353 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKP 583
            P SV        KIPDKEIL IVKENFDFRPGMI INLDLKRGG+ R+LKTAAYGHFGR+  DFTWEVVKPLK+EKP
Sbjct:  318 PLSVFVDTYGTGKIPDKEILEIVKENFDFRPGMIIINLDLKRGGSGRYLKTAAYGHFGRDGADFTWEVVKPLKWEKP 394          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_PINCO (S-adenosylmethionine synthetase 2 OS=Pinus contorta GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.727e-27
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = -1
Query:  350 IPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 544
            IPDKEIL I+KE+FDFRPGMI INLDLKRGGN RF KTAAYGHFGR+DPDFTWE VKPLK+EK Q
Sbjct:  328 IPDKEILEIIKEHFDFRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWETVKPLKWEKAQ 392          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_PICSI (S-adenosylmethionine synthetase 2 OS=Picea sitchensis GN=METK2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.727e-27
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = -1
Query:  350 IPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 544
            IPDKEIL ++KENFDFRPGMI INLDLKRGGN RF KTAAYGHFGR+DPDFTWE VKPLK++K Q
Sbjct:  328 IPDKEILELIKENFDFRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWETVKPLKWDKAQ 392          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK4_ARATH (S-adenosylmethionine synthetase 4 OS=Arabidopsis thaliana GN=METK4 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.562e-27
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = -1
Query:  350 KIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 547
            KIPDKEIL IVKE+FDFRPGMI+INLDLKRGGN RFLKTAAYGHFGR+D DFTWEVVKPLK  K Q
Sbjct:  327 KIPDKEILEIVKESFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKSNKVQ 392          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_BRAJU (S-adenosylmethionine synthetase 2 OS=Brassica juncea GN=MSAMS2 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.562e-27
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = -1
Query:  350 KIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 547
            KIPDKEIL IVKE+FDFRPGMI+INLDLKRGGN RFLKTAAYGHFGR+D DFTWEVVKPLK  K Q
Sbjct:  327 KIPDKEILEIVKESFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKSNKVQ 392          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_BETVU (S-adenosylmethionine synthetase 1 OS=Beta vulgaris GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.076e-27
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = -1
Query:  350 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 583
            P SV        KIPDK+IL+IVKE FDFRPGMIAINLDL +GG SR+LKTAAYGHFGR+DPDFTWEVVKPLK++KPQ
Sbjct:  319 PLSVFVDTYGTGKIPDKDILKIVKETFDFRPGMIAINLDLLKGG-SRYLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQ 395          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_TRIMO (S-adenosylmethionine synthetase 1 OS=Triticum monococcum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.935e-27
Identity = 56/64 (87.50%), Postives = 62/64 (96.88%), Query Frame = -1
Query:  356 KIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 547
            KIPDKEIL+IVKENFDFRPGMI+INLDLK+GGN RF+KTAAYGHFGRED DFTWEVVKPLK++K
Sbjct:  329 KIPDKEILKIVKENFDFRPGMISINLDLKKGGN-RFIKTAAYGHFGREDADFTWEVVKPLKFDK 391          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK_PINBN (S-adenosylmethionine synthetase OS=Pinus banksiana GN=METK PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.768e-26
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = -1
Query:  350 IPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 544
            IPDKEIL I+KE+FDFRPGMI+INLDLKRGGN R  KTAAYGHFGR+DPDFTWE VKPLK+EK Q
Sbjct:  328 IPDKEILEIIKEHFDFRPGMISINLDLKRGGNGRSQKTAAYGHFGRDDPDFTWETVKPLKWEKAQ 392          
The following BLAST results are available for this feature:
BLAST of CN192446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
METK_WHEAT1.224e-2777.92S-adenosylmethionine synthetase OS=Triticum aestiv... [more]
METK_CARPA1.224e-2783.10S-adenosylmethionine synthetase OS=Carica papaya G... [more]
METK4_HORVU2.088e-2776.62S-adenosylmethionine synthetase 4 OS=Hordeum vulga... [more]
METK2_PINCO2.727e-2784.62S-adenosylmethionine synthetase 2 OS=Pinus contort... [more]
METK2_PICSI2.727e-2783.08S-adenosylmethionine synthetase 2 OS=Picea sitchen... [more]
METK4_ARATH3.562e-2786.36S-adenosylmethionine synthetase 4 OS=Arabidopsis t... [more]
METK2_BRAJU3.562e-2786.36S-adenosylmethionine synthetase 2 OS=Brassica junc... [more]
METK1_BETVU6.076e-2775.64S-adenosylmethionine synthetase 1 OS=Beta vulgaris... [more]
METK1_TRIMO7.935e-2787.50S-adenosylmethionine synthetase 1 OS=Triticum mono... [more]
METK_PINBN1.768e-2683.08S-adenosylmethionine synthetase OS=Pinus banksiana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006O11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192446 ID=CN192446; Name=CN192446; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTAGATGAATACTCATAATTTGATTATGACCAAAA
AAATGCATTAATAGTACATTAACAAATAACAATGTTTCTCCACAAACGAG
CTCTTCTTCCATCTCTATTTCTCTTCCTAGCATATCTCATACAGGCAACT
TCTCTGTAATTCTTTCATCGACTATGACTCAATTAGACCACATATATCTT
TCTATTATGGCAAAGATAATACAAATTTATTTTTTAAAAAAAAGGCCAAG
ACCAAGAGAGAAAAAAGACATAATCTGACAGGCAGACAAAAGAACAAGTA
AATTATTGAGTTCAAACAAAGAATGAAACTGCATACTTAAATTCTACTCT
TGGGGTTTCTCATACTTGAGGGGCTTCACCACCTCCCATGTGAAGTCAGG
ATCCTCCCTTCCAAAATGCCCATATGCAGCAGTCTTCAAAAACCTGCTAT
TTCCTCCCCTCTTGAGATCCAAGTTAATGGCAATCATTCCAGGCCTGAAA
TCAAAGTTCTCCTTCACAATCCTCAGGATCTCCTTGTCCGGAATCTTTTC
CAGTTCGATAAGTGGTCAACAAACACTGAAAGGGGCTCTCCT
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