CN192446

Overview
NameCN192446
Unique NameCN192446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK_MEDFA (S-adenosylmethionine synthetase OS=Medicago falcata GN=SAMS PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.768e-26
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = -1
Query:  365 KIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK 547
            KIPDKEIL IVKE FDFRPGMI+INLDLKRGGN+RFLKTAAYGHFGR+D DFTWEVVKPLK
Sbjct:  329 KIPDKEILNIVKETFDFRPGMISINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLK 389          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK3_ATRNU (S-adenosylmethionine synthetase 3 OS=Atriplex nummularia GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.309e-26
Identity = 59/78 (75.64%), Postives = 65/78 (83.33%), Query Frame = -1
Query:  350 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 583
            P SV        KIPDKEIL+IVKE+FDFRPGMIAINLDL +GG SR+LKTAAYGHFGR+D DFTWE VKPLK+EKPQ
Sbjct:  319 PLSVFVDTYGTGKIPDKEILKIVKESFDFRPGMIAINLDLLKGG-SRYLKTAAYGHFGRDDADFTWETVKPLKWEKPQ 395          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK4_ATRNU (S-adenosylmethionine synthetase 4 OS=Atriplex nummularia GN=SAMS4 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.015e-26
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = -1
Query:  350 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 583
            P SV        KIPDKEIL+IVKE FDFRPGMIAINLDL +GG SR+LKTAAYGHFGR+D DFTWE VKPLK+EKPQ
Sbjct:  319 PLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLLKGG-SRYLKTAAYGHFGRDDADFTWETVKPLKWEKPQ 395          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_ATRNU (S-adenosylmethionine synthetase 2 OS=Atriplex nummularia GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.015e-26
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = -1
Query:  350 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 583
            P SV        KIPDKEIL+IVKE FDFRPGMIAINLDL +GG SR+LKTAAYGHFGR+D DFTWE VKPLK+EKPQ
Sbjct:  319 PLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLLKGG-SRYLKTAAYGHFGRDDADFTWETVKPLKWEKPQ 395          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_ATRNU (S-adenosylmethionine synthetase 1 OS=Atriplex nummularia GN=SAMS1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.015e-26
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = -1
Query:  350 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 583
            P SV        KIPDKEIL+IVKE FDFRPGMIAINLDL +GG SR+LKTAAYGHFGR+D DFTWE VKPLK+EKPQ
Sbjct:  319 PLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLLKGG-SRYLKTAAYGHFGRDDADFTWETVKPLKWEKPQ 395          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK3_PICSI (S-adenosylmethionine synthetase 3 OS=Picea sitchensis GN=METK3 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.717e-26
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = -1
Query:  356 IPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 544
            IPDK IL ++K+NFDFRPGMI INLDLKRGGN RF KTAAYGHFGR+DPDFTWE+VKPLK EK
Sbjct:  328 IPDKVILELIKKNFDFRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEIVKPLKQEK 390          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK3_HORVU (S-adenosylmethionine synthetase 3 OS=Hordeum vulgare GN=SAM3 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.717e-26
Identity = 53/64 (82.81%), Postives = 62/64 (96.88%), Query Frame = -1
Query:  356 KIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 547
            KIPD+EIL++VKENFDFRPGMI+INLDLK+GGN RF+KTAAYGHFGR+D DFTWEVVKPLK++K
Sbjct:  329 KIPDREILKLVKENFDFRPGMISINLDLKKGGN-RFIKTAAYGHFGRDDADFTWEVVKPLKFDK 391          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK_MUSAC (S-adenosylmethionine synthetase OS=Musa acuminata GN=METK PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.773e-26
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = -1
Query:  353 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKP 583
            P SV        KIPDKEIL+IVKENFDFRPG+I INL LKRGG  R+LKTAAYGHFGR+DPDFTWEVVKPL+ EKP
Sbjct:  316 PLSVFVDTYGTGKIPDKEILKIVKENFDFRPGLITINLGLKRGGY-RYLKTAAYGHFGRDDPDFTWEVVKPLELEKP 391          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK_MESCR (S-adenosylmethionine synthetase OS=Mesembryanthemum crystallinum GN=METK PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.773e-26
Identity = 59/79 (74.68%), Postives = 64/79 (81.01%), Query Frame = -1
Query:  347 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE 583
            P SV        KI DK+IL+IVKE FDFRPGMIA NLDL RGGN R+LKTAAYGHFGR+D DFTWEVVKPLK+EKPQE
Sbjct:  315 PLSVFVDTYGTGKISDKDILKIVKETFDFRPGMIANNLDLLRGGN-RYLKTAAYGHFGRDDADFTWEVVKPLKWEKPQE 392          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_HORVU (S-adenosylmethionine synthetase 1 OS=Hordeum vulgare GN=SAM1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.773e-26
Identity = 53/64 (82.81%), Postives = 61/64 (95.31%), Query Frame = -1
Query:  356 KIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 547
            KIPD+EIL++VKENFDFRPGMI INLDLK+GGN RF+KTAAYGHFGR+D DFTWEVVKPLK++K
Sbjct:  329 KIPDREILKLVKENFDFRPGMITINLDLKKGGN-RFIKTAAYGHFGRDDADFTWEVVKPLKFDK 391          
The following BLAST results are available for this feature:
BLAST of CN192446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
METK_MEDFA1.768e-2690.16S-adenosylmethionine synthetase OS=Medicago falcat... [more]
METK3_ATRNU2.309e-2675.64S-adenosylmethionine synthetase 3 OS=Atriplex numm... [more]
METK4_ATRNU3.015e-2675.64S-adenosylmethionine synthetase 4 OS=Atriplex numm... [more]
METK2_ATRNU3.015e-2675.64S-adenosylmethionine synthetase 2 OS=Atriplex numm... [more]
METK1_ATRNU3.015e-2675.64S-adenosylmethionine synthetase 1 OS=Atriplex numm... [more]
METK3_PICSI6.717e-2682.54S-adenosylmethionine synthetase 3 OS=Picea sitchen... [more]
METK3_HORVU6.717e-2682.81S-adenosylmethionine synthetase 3 OS=Hordeum vulga... [more]
METK_MUSAC8.773e-2675.32S-adenosylmethionine synthetase OS=Musa acuminata ... [more]
METK_MESCR8.773e-2674.68S-adenosylmethionine synthetase OS=Mesembryanthemu... [more]
METK1_HORVU8.773e-2682.81S-adenosylmethionine synthetase 1 OS=Hordeum vulga... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006O11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192446 ID=CN192446; Name=CN192446; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTAGATGAATACTCATAATTTGATTATGACCAAAA
AAATGCATTAATAGTACATTAACAAATAACAATGTTTCTCCACAAACGAG
CTCTTCTTCCATCTCTATTTCTCTTCCTAGCATATCTCATACAGGCAACT
TCTCTGTAATTCTTTCATCGACTATGACTCAATTAGACCACATATATCTT
TCTATTATGGCAAAGATAATACAAATTTATTTTTTAAAAAAAAGGCCAAG
ACCAAGAGAGAAAAAAGACATAATCTGACAGGCAGACAAAAGAACAAGTA
AATTATTGAGTTCAAACAAAGAATGAAACTGCATACTTAAATTCTACTCT
TGGGGTTTCTCATACTTGAGGGGCTTCACCACCTCCCATGTGAAGTCAGG
ATCCTCCCTTCCAAAATGCCCATATGCAGCAGTCTTCAAAAACCTGCTAT
TTCCTCCCCTCTTGAGATCCAAGTTAATGGCAATCATTCCAGGCCTGAAA
TCAAAGTTCTCCTTCACAATCCTCAGGATCTCCTTGTCCGGAATCTTTTC
CAGTTCGATAAGTGGTCAACAAACACTGAAAGGGGCTCTCCT
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