CN192446

Overview
NameCN192446
Unique NameCN192446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK3_CATRO (S-adenosylmethionine synthetase 3 OS=Catharanthus roseus GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.401e-23
Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = -1
Query:  365 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK 583
            P SV     +  KIPDK+IL ++KENFDFRPGMIAINLDLKRGGN R+ KTAA GH GR+DPDFTWE VK LK
Sbjct:  315 PLSVFVDTFKTGKIPDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAALGHLGRDDPDFTWETVKILK 387          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_ACTCH (S-adenosylmethionine synthetase 2 OS=Actinidia chinensis GN=SAM2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.829e-23
Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = -1
Query:  365 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK 583
            P SV     +  KIPDK+IL ++KENFDFRPGMIAINLDLKRGGN R+ KTAAYGHFGR+D D TWE VK LK
Sbjct:  315 PLSVFVDTYKTGKIPDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAAYGHFGRDDADLTWETVKILK 387          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK3_SOLLC (S-adenosylmethionine synthetase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.079e-23
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = -1
Query:  365 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK 583
            P SV     +   IPDK+IL ++KENFDFRPGM++INLDL RGGN R+ KTAAYGHFGR+DPDFTWE VK LK
Sbjct:  315 PLSVFVDTYKTGTIPDKDILVLIKENFDFRPGMMSINLDLLRGGNYRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_SOLTU (S-adenosylmethionine synthetase 2 OS=Solanum tuberosum GN=METK2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.079e-23
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = -1
Query:  365 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK 583
            P SV     +   IPDK+IL ++KENFDFRPGM++INLDL RGGN R+ KTAAYGHFGR+DPDFTWE VK LK
Sbjct:  315 PLSVFVDTYKTGTIPDKDILVLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_TOBAC (S-adenosylmethionine synthetase 1 OS=Nicotiana tabacum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.549e-22
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = -1
Query:  365 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK 583
            P SV     +   IPDK+IL ++KENFDFRPGM++INLDL RGGN R+ KTAAYGHFGR+DPDF+WE VK LK
Sbjct:  315 PLSVFVDTYKTGTIPDKDILTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFSWETVKVLK 387          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_TOBAC (S-adenosylmethionine synthetase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.023e-22
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = -1
Query:  365 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK 583
            P SV     +   IPDK+IL ++KENFDFRPGMIAINLDL RGGN R+ KTAAYGHFGR++ DFTWE VK LK
Sbjct:  315 PLSVFVDTYKTGTIPDKDILALIKENFDFRPGMIAINLDLLRGGNFRYQKTAAYGHFGRDEADFTWETVKALK 387          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_PETHY (S-adenosylmethionine synthetase 1 OS=Petunia hybrida GN=SAM1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.023e-22
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = -1
Query:  368 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPL 583
            P SV     +   IPDK+IL ++KENFDFRPGM++INLDL RGGN R+ KTAAYGHFGR+DPDFTWE VK L
Sbjct:  315 PLSVFVDTYKTGTIPDKDILTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVL 386          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_PETHY (S-adenosylmethionine synthetase 2 OS=Petunia hybrida GN=SAM2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.712e-21
Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = -1
Query:  368 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPL 583
            P SV     +   IP K++L ++KENFDFRPGM++INLDL RGGN R+ KTAAYGHFGR+DPDFTWE VK L
Sbjct:  315 PLSVFVDTYKTGTIPGKDVLTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVL 386          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK_CHLRE (S-adenosylmethionine synthetase OS=Chlamydomonas reinhardtii GN=METM PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.110e-20
Identity = 42/60 (70.00%), Postives = 53/60 (88.33%), Query Frame = -1
Query:  365 IPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK 544
            +PD EIL++++++FDFRPG+I  NLDLKRGGN R+ KTAAYGHFGR+DPDFTWE VK L+
Sbjct:  331 MPDAEILKLIRKHFDFRPGLIGKNLDLKRGGNKRYQKTAAYGHFGRDDPDFTWETVKKLE 390          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK_OSTTA (S-adenosylmethionine synthetase OS=Ostreococcus tauri GN=METK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.559e-17
Identity = 44/61 (72.13%), Postives = 47/61 (77.05%), Query Frame = -1
Query:  368 KIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD-FTWEVVKPL 547
            KIPD EIL  VKE FDFR GMI  +LDLKRGGN R+  TAAYGHFGR+D D FTWE V PL
Sbjct:  326 KIPDSEILEKVKEKFDFRAGMIGKSLDLKRGGNKRYQTTAAYGHFGRDDTDVFTWEKVVPL 386          
The following BLAST results are available for this feature:
BLAST of CN192446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
METK3_CATRO1.401e-2371.23S-adenosylmethionine synthetase 3 OS=Catharanthus ... [more]
METK2_ACTCH1.829e-2371.23S-adenosylmethionine synthetase 2 OS=Actinidia chi... [more]
METK3_SOLLC9.079e-2368.49S-adenosylmethionine synthetase 3 OS=Solanum lycop... [more]
METK2_SOLTU9.079e-2368.49S-adenosylmethionine synthetase 2 OS=Solanum tuber... [more]
METK1_TOBAC1.549e-2267.12S-adenosylmethionine synthetase 1 OS=Nicotiana tab... [more]
METK2_TOBAC2.023e-2268.49S-adenosylmethionine synthetase 2 OS=Nicotiana tab... [more]
METK1_PETHY2.023e-2268.06S-adenosylmethionine synthetase 1 OS=Petunia hybri... [more]
METK2_PETHY1.712e-2165.28S-adenosylmethionine synthetase 2 OS=Petunia hybri... [more]
METK_CHLRE1.110e-2070.00S-adenosylmethionine synthetase OS=Chlamydomonas r... [more]
METK_OSTTA2.559e-1772.13S-adenosylmethionine synthetase OS=Ostreococcus ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006O11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192446 ID=CN192446; Name=CN192446; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTAGATGAATACTCATAATTTGATTATGACCAAAA
AAATGCATTAATAGTACATTAACAAATAACAATGTTTCTCCACAAACGAG
CTCTTCTTCCATCTCTATTTCTCTTCCTAGCATATCTCATACAGGCAACT
TCTCTGTAATTCTTTCATCGACTATGACTCAATTAGACCACATATATCTT
TCTATTATGGCAAAGATAATACAAATTTATTTTTTAAAAAAAAGGCCAAG
ACCAAGAGAGAAAAAAGACATAATCTGACAGGCAGACAAAAGAACAAGTA
AATTATTGAGTTCAAACAAAGAATGAAACTGCATACTTAAATTCTACTCT
TGGGGTTTCTCATACTTGAGGGGCTTCACCACCTCCCATGTGAAGTCAGG
ATCCTCCCTTCCAAAATGCCCATATGCAGCAGTCTTCAAAAACCTGCTAT
TTCCTCCCCTCTTGAGATCCAAGTTAATGGCAATCATTCCAGGCCTGAAA
TCAAAGTTCTCCTTCACAATCCTCAGGATCTCCTTGTCCGGAATCTTTTC
CAGTTCGATAAGTGGTCAACAAACACTGAAAGGGGCTCTCCT
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