CN192389

Overview
NameCN192389
Unique NameCN192389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 4.614e-34
Identity = 69/108 (63.89%), Postives = 84/108 (77.78%), Query Frame = -2
Query:  240 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYA 563
            GP  S Y GGVF + I F  DYPFKPPKV FRT+++  NINS G ICLDILK+ WSPALT+SKVLLSICSLLTD NP DPLV  IA +Y +++A+++  AR WT++YA
Sbjct:   99 GPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.614e-34
Identity = 69/108 (63.89%), Postives = 84/108 (77.78%), Query Frame = -2
Query:  240 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYA 563
            GP  S Y GGVF + I F  DYPFKPPKV FRT+++  NINS G ICLDILK+ WSPALT+SKVLLSICSLLTD NP DPLV  IA +Y +++A+++  AR WT++YA
Sbjct:   99 GPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.614e-34
Identity = 69/108 (63.89%), Postives = 84/108 (77.78%), Query Frame = -2
Query:  240 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYA 563
            GP  S Y GGVF + I F  DYPFKPPKV FRT+++  NINS G ICLDILK+ WSPALT+SKVLLSICSLLTD NP DPLV  IA +Y +++A+++  AR WT++YA
Sbjct:   99 GPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.774e-31
Identity = 59/108 (54.63%), Postives = 81/108 (75.00%), Query Frame = -2
Query:  240 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYA 563
            GP  +PY GG+F ++I FP DYPFKPPK  F+T ++ PNIN  GSIC++ILK+ W+PAL + KVLLSI  LL  PNPDDPLVPEI   +K+++ +++  AR +T ++A
Sbjct:   45 GPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTARHA 152          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.698e-28
Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = -2
Query:  237 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYAL 563
            GP DSP+ GGVF + +  P DYP   PKV F TK++ PNI+  G ICLD+LK+ WSPAL +  +LLSI +LL+ PNPDDPL  ++A  +K ++A+    AR WTQKYA+
Sbjct:   41 GPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKYAV 149          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.896e-28
Identity = 55/109 (50.46%), Postives = 79/109 (72.48%), Query Frame = -2
Query:  237 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYAL 563
            GP DSP+ GG F + +  P +YP   PKV F TK++ PN++ +G ICLDILK+ WSPAL +  VLLSI +LL+ PNPDDPL  ++A ++K+++A+    AR+WT+ YA+
Sbjct:   41 GPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.783e-28
Identity = 56/109 (51.38%), Postives = 78/109 (71.56%), Query Frame = -2
Query:  237 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYAL 563
            GP DSP+ GG F + +  P +YP   PKV F TK++ PN++  G ICLDILK+ WSPAL +  VLLSI +LL+ PNPDDPL  ++A ++KS++A+    AR+WT+ YA+
Sbjct:   41 GPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYAM 149          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.427e-28
Identity = 55/109 (50.46%), Postives = 78/109 (71.56%), Query Frame = -2
Query:  237 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYAL 563
            GP DSP+ GG F + +  P +YP   PKV F TK++ PN++  G ICLDILK+ WSPAL +  VLLSI +LL+ PNPDDPL  ++A ++K+++A+    AR+WT+ YA+
Sbjct:   41 GPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.427e-28
Identity = 55/109 (50.46%), Postives = 78/109 (71.56%), Query Frame = -2
Query:  237 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYAL 563
            GP DSP+ GG F + +  P +YP   PKV F TK++ PN++  G ICLDILK+ WSPAL +  VLLSI +LL+ PNPDDPL  ++A ++K+++A+    AR+WT+ YA+
Sbjct:   41 GPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.427e-28
Identity = 55/109 (50.46%), Postives = 78/109 (71.56%), Query Frame = -2
Query:  237 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYAL 563
            GP DSP+ GG F + +  P +YP   PKV F TK++ PN++  G ICLDILK+ WSPAL +  VLLSI +LL+ PNPDDPL  ++A ++K+++A+    AR+WT+ YA+
Sbjct:   41 GPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
The following BLAST results are available for this feature:
BLAST of CN192389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
UB2E3_MOUSE4.614e-3463.89Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN4.614e-3463.89Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN4.614e-3463.89Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UBC31_ARATH4.774e-3154.63Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBE2N_DROME1.698e-2853.21Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBE2N_MACFA2.896e-2850.46Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2N_RAT3.783e-2851.38Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_PONAB8.427e-2850.46Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE8.427e-2850.46Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN8.427e-2850.46Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006N02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006N02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192389 ID=CN192389; Name=CN192389; organism=Citrus sinensis; type=EST; length=564bp
TTTTTTTTTTTTTTAAACAAGTACTTAAGCCATTAACTACTTTCCATCAA
AGGAGCTTCAAACACAAACTTTCAACATTAACATAAAAACGTCCCGCCCT
TGCAACTCCCAACACCATTCTAAAACACCAACGTCTGCCCTCCCCAAAGC
AGGTTAAAGAAAATAGATAGACAACCCCCCCAACATATTTCAATAAAGGG
GTTCCTTTTTCGGCAATATCCAAACAACCTTCATCCCAGGGCATACTTCT
GGGTCCAGCTCCGGGCCGGGGATTCATATTTGGCCTTGTCGGACTTGTAC
TTGTGGGCAATCTCCGGAACAAGAGGGTCGTCAGGATTTGGATCAGTAAG
CAAGGAGCAGATAGAGAGCAGGACCTTTGAAAGGGTAAGCGCTGGACTCC
ACGGTTCTTTAAGGATATCAAGACAAATGCTCCCATTGCTGTTGATGTTC
GGGGGGAAAACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAAGGATA
ATCAGGAGGAAAATGAATGGTAACTAAAAATACACCTCCTGCATATGGGC
TATCAAAAGGGCCC
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