CN192387

Overview
NameCN192387
Unique NameCN192387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23_META3 (50S ribosomal protein L23P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl23p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.204e-17
Identity = 38/85 (44.71%), Postives = 61/85 (71.76%), Query Frame = -1
Query:  125 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 379
            +D + ++K P+ +E  MK IE+ N LVF +D +A K  +K+AVK++++++ K +NTLI P G KKAY++L  +YDA +VA  +GI
Sbjct:    1 MDAFDVIKMPIISEKTMKLIEEENKLVFYIDKKATKTDVKNAVKELFDVEVKDLNTLITPKGKKKAYIKLKDEYDAGEVAANLGI 85          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23_METJA (50S ribosomal protein L23P OS=Methanocaldococcus jannaschii GN=rpl23p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.103e-17
Identity = 40/85 (47.06%), Postives = 60/85 (70.59%), Query Frame = -1
Query:  125 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 379
            +D + ++K P+ TE  ++ IE+ N LVF VD RA K+ IK A+K++++++ +KVNTLI P G KKAYV+L   YDA  +A  +GI
Sbjct:    1 MDAFDVIKAPVVTEKTVRMIEEENKLVFYVDRRATKQDIKRAMKELFDVEVEKVNTLITPKGEKKAYVKLKEGYDASKIAASLGI 85          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23_PYRKO (50S ribosomal protein L23P OS=Pyrococcus kodakaraensis GN=rpl23p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.058e-16
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = -1
Query:  125 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 379
            +D Y+++  PL TE A+  IE  N L FIVD RA K+ IK AV++M+ ++  KVNTL+   G KKAYV+L P+YDA ++A ++G+
Sbjct:    1 MDPYKVIIRPLVTEKAVSLIERENKLTFIVDRRATKQDIKRAVEEMFNVKVAKVNTLVTMKGEKKAYVKLKPEYDASEIAARLGL 85          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23_PYRFU (50S ribosomal protein L23P OS=Pyrococcus furiosus GN=rpl23p PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.058e-16
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = -1
Query:  125 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 379
            +D Y+++  P+ TE A+  IE  N L FIVD RA K+ IK AV++++ ++ +KVNTLI P G KKAYV+L P+Y A +VA ++G+
Sbjct:    1 MDPYKVIIRPVVTEKAISLIEKENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARLGL 85          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23_THEON (50S ribosomal protein L23P OS=Thermococcus onnurineus (strain NA1) GN=rpl23p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = -1
Query:  125 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 379
            +D Y+++  P+ TE A+  IE+ N L FIVD RA K+ IK AV+ M++++ +KVNTLI   G KKAYV+L P+Y A ++A +IG+
Sbjct:    1 MDPYKVIIRPVVTEKAVAMIENENKLTFIVDRRATKQDIKRAVEAMFDVKVEKVNTLITMRGEKKAYVKLKPEYSASEIAARIGL 85          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23_PYRHO (50S ribosomal protein L23P OS=Pyrococcus horikoshii GN=rpl23p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 39/85 (45.88%), Postives = 60/85 (70.59%), Query Frame = -1
Query:  125 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 379
            +D Y+++  P+ TE A+  IE  N L FIVD RA K  IK A+++++ ++ +KVNTLI P G KKAYV+L P+Y A ++A ++G+
Sbjct:    1 MDPYKVIIRPVVTEKAISLIEKENKLTFIVDRRATKTDIKKAIEEIFNVKVEKVNTLITPKGEKKAYVKLKPEYSASEIAARLGL 85          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23_THEGJ (50S ribosomal protein L23P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl23p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.079e-16
Identity = 40/85 (47.06%), Postives = 61/85 (71.76%), Query Frame = -1
Query:  125 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 379
            +D Y+++  PL TE A+  IE  N L FIVD +A K+ IK AV++M+ ++ +KVNTLI   G KKAYV+L P+Y+A ++A ++G+
Sbjct:    1 MDPYKVIIRPLVTEKAVSLIEKENKLTFIVDRKATKQDIKRAVEEMFNVKVEKVNTLITMKGEKKAYVKLRPEYNASEIAARLGL 85          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23_METKA (50S ribosomal protein L23P OS=Methanopyrus kandleri GN=rpl23p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.079e-16
Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = -1
Query:  122 DHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 376
            D + +L YP+ TE AM+ +E  N L FIV   A+K  IK AV+++++++ +KVNTLI P G KKAYV+L P+Y A DVA  +GI+
Sbjct:   11 DPHDVLLYPVATEKAMRLMEAENKLTFIVRRDANKPLIKKAVEELFDVEVEKVNTLITPTGEKKAYVKLKPEYRAEDVAVDLGIL 95          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23_PYRAB (50S ribosomal protein L23P OS=Pyrococcus abyssi GN=rpl23p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.021e-16
Identity = 38/85 (44.71%), Postives = 61/85 (71.76%), Query Frame = -1
Query:  125 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 379
            +D Y+++  P+ T+ A+  IE  N L FIVD RA K+ IK A+++++ ++ +KVNTLI P G KKAYV+L P+Y A ++A ++G+
Sbjct:    1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITPKGEKKAYVKLKPEYSASEIAARLGL 85          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23_THESM (50S ribosomal protein L23P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl23p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.607e-15
Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = -1
Query:  125 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 379
            +D Y+++  P+ TE A+  +E  N L FIVD RA K  IK AV+ +YE++  KVN +I   G KKAYV+L P+Y A +VA +IG+
Sbjct:    1 MDPYKVIVRPVVTEKAISMVERENKLTFIVDKRATKPDIKKAVETVYEVKVDKVNIVITMKGEKKAYVKLKPEYSASEVAARIGL 85          
The following BLAST results are available for this feature:
BLAST of CN192387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RL23_META36.204e-1744.7150S ribosomal protein L23P OS=Methanococcus aeolic... [more]
RL23_METJA8.103e-1747.0650S ribosomal protein L23P OS=Methanocaldococcus j... [more]
RL23_PYRKO1.058e-1648.2450S ribosomal protein L23P OS=Pyrococcus kodakarae... [more]
RL23_PYRFU1.058e-1648.2450S ribosomal protein L23P OS=Pyrococcus furiosus ... [more]
RL23_THEON1.805e-1648.2450S ribosomal protein L23P OS=Thermococcus onnurin... [more]
RL23_PYRHO1.805e-1645.8850S ribosomal protein L23P OS=Pyrococcus horikoshi... [more]
RL23_THEGJ3.079e-1647.0650S ribosomal protein L23P OS=Thermococcus gammato... [more]
RL23_METKA3.079e-1649.4150S ribosomal protein L23P OS=Methanopyrus kandler... [more]
RL23_PYRAB4.021e-1644.7150S ribosomal protein L23P OS=Pyrococcus abyssi GN... [more]
RL23_THESM2.607e-1547.0650S ribosomal protein L23P OS=Thermococcus sibiric... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006M24_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192387 ID=CN192387; Name=CN192387; organism=Citrus sinensis; type=EST; length=619bp
GAGGGGCATCCAATGCAAAAACTCAATATAAAAGATAGATCTGAGTACAT
ATTTGAAAATAACCAAAACGAAATTGGAGTCCTAACAAAACTGTTGACAA
TACACACGAACTCACTCCTTAGATAATTCCAATCTTGTTGGCCACATCCA
ATGCATCATAATCCGGAGTCAGCCTAACATATGCCTTCTTAGTTCCATCA
GGTCTGATCAAAGTGTTGACTTTCTTGGTCTGAATTTCGTACATTTTCTT
GACGGCATCCTTGATCTTCCTCTTATCAGCACGGATGTCAACAATGAAAA
CCAAGGTATTATTGTCCTCGATCTTCTTCATAGCTGATTCGGTAGTCAAG
GGATACTTGAGAATTTGGTAGTGGTCCAACTTGTTCCTCGGTGGAGCACT
AATGCGGGGATACTTGGGGTTTCTGTCCTTCTTCAGGGTCTTTGGCCTAT
GGAATGTAACTGAGGTCCGCATCTTCTTCGCCTTCTTCTTAAAAGTCGGC
CCTGATTTCACAGCCTTGGCAACCTTAGTAGCCTGGGCCTTTGGATCACC
CTTTTTTGAGCTGTCAACTTTGGGAGCCATTGGATTGGACTTGTCCTACG
AAACACCTCTGAATCTAAC
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