CN192368

Overview
NameCN192368
Unique NameCN192368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length354
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192368 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.729e-13
Identity = 38/105 (36.19%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   61 FRSPTMAMFLLFLFTVSSAL-------DMSIVSYDKTHEAKSSTWRTDYEVMAMFQAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSKNRTYKVGLNRFAD 354
            F +P+++ F L +   +SAL       D SIV Y   H   +       +++ +F++W+ +H KAY ++ EK  RFE+F+ENL  ID+ N++  +Y +GLN FAD
Sbjct:    3 FSAPSLSKFSLLVAISASALLCCAFARDFSIVGYTPEHLTNTD------KLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINSYWLGLNEFAD 101          
BLAST of CN192368 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.003e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   91 LFLFTVSSALDMSIVSYDKTHEAKSSTWRTDYEVMAMFQAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSKNRTYKVGLNRFAD 354
            LF+    S  D SIV Y +  +  +ST R    ++ +F +W++ H K Y  + EK  RFEIFK+NL +IDE N KN +Y +GLN FAD
Sbjct:   17 LFVHMSVSFGDFSIVGYSQ--DDLTSTER----LIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFAD 98          
BLAST of CN192368 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.595e-11
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1
Query:  190 VMAMFQAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSKNRTYKVGLNRFAD 354
            ++ +F +W++KH K Y ++ EK  RFEIF++NL +IDE N KN +Y +GLN FAD
Sbjct:   44 LIQLFDSWMLKHNKIYESIDEKIYRFEIFRDNLMYIDETNKKNNSYWLGLNGFAD 98          
BLAST of CN192368 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.781e-11
Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 1
Query:   82 MFLLFLFTVSSALDMSIVSYDKTHEAKS-STWRTDYEVMAMFQAWLVKHGKAY-NALG-EKEKRFEIFKENLRFIDEHNSK---NRTYKVGLNRFAD 354
            + LL +   ++A DMSI+SY+  H A+      T+ E  A +  WL ++G    NALG E E+RF +F +NL+F+D HN++      +++G+NRFAD
Sbjct:   11 LLLLIVGAATAAPDMSIISYNAEHGARGLEEGPTEAEARAAYDLWLAENGGGSPNALGGEHERRFLVFWDNLKFVDAHNARADERGGFRLGMNRFAD 107          
The following BLAST results are available for this feature:
BLAST of CN192368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
XCP1_ARATH4.729e-1336.19Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
PAPA3_CARPA4.003e-1244.32Caricain OS=Carica papaya PE=1 SV=2[more]
PAPA2_CARPA2.595e-1150.91Chymopapain OS=Carica papaya PE=1 SV=2[more]
ORYB_ORYSJ5.781e-1139.18Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006M10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006M10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192368 ID=CN192368; Name=CN192368; organism=Citrus sinensis; type=EST; length=354bp
GAGGGCTTCTTCTCCCAAAAAGAAAAAAAAAAAGTTCCTTTTCTCAAAAG
ATAGGGTTTGTTTAGATCACCAACCATGGCCATGTTTTTACTTTTTCTCT
TCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTTATGATAAAACC
CATGAGGCAAAATCTAGCACCTGGAGGACCGACTATGAGGTTATGGCTAT
GTTCCAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAACGCTTTGGGTG
AAAAAGAGAAAAGGTTTGAGATCTTTAAGGAAAATCTTAGGTTTATTGAT
GAACATAACTCAAAGAACCGGACCTACAAGGTTGGGTTGAACCGGTTTGC
TGAT
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