CN192358

Overview
NameCN192358
Unique NameCN192358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: E4PD_YERPN (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=epd PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.874e-30
Identity = 75/234 (32.05%), Postives = 125/234 (53.42%), Query Frame = 1
Query:   31 TLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA---DAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFD 723
            +L +   +I++  + +  ++PW + G+D V++ SGV+ +     AH+  GAKKV+ + P     DA + V GVN +  +    IVSNASCTTNC+ P+ +++   +GI  G +             D    +D R  R ASQ+IIP  T  A  + ++ P    +   ++ RVPT NV+ +DL+  +       +V   ++ A+ G+ +GI+ YT+  +VS DF  D  S+I D
Sbjct:   67 SLYVGDDIIRLIHQSEIEQLPWSELGIDVVLDCSGVYGSREDGEAHVASGAKKVLFAHPGGHDLDATV-VYGVNHQDLRAEHRIVSNASCTTNCIIPIIQLLDIAYGIESGTVTTIHSSMNDQPVIDAYH-QDLRRTRAASQSIIPVDTKLAAGITRIFPKFCDRFEAISVRVPTINVTAIDLSVSVTHPVGVAEVNQLLQKAARGAFRGIVDYTELPLVSMDFNHDPHSAIVD 298          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: E4PD_YERPE (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pestis GN=epd PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.874e-30
Identity = 75/234 (32.05%), Postives = 125/234 (53.42%), Query Frame = 1
Query:   31 TLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA---DAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFD 723
            +L +   +I++  + +  ++PW + G+D V++ SGV+ +     AH+  GAKKV+ + P     DA + V GVN +  +    IVSNASCTTNC+ P+ +++   +GI  G +             D    +D R  R ASQ+IIP  T  A  + ++ P    +   ++ RVPT NV+ +DL+  +       +V   ++ A+ G+ +GI+ YT+  +VS DF  D  S+I D
Sbjct:   67 SLYVGDDIIRLIHQSEIEQLPWSELGIDVVLDCSGVYGSREDGEAHVASGAKKVLFAHPGGHDLDATV-VYGVNHQDLRAEHRIVSNASCTTNCIIPIIQLLDIAYGIESGTVTTIHSSMNDQPVIDAYH-QDLRRTRAASQSIIPVDTKLAAGITRIFPKFCDRFEAISVRVPTINVTAIDLSVSVTHPVGVAEVNQLLQKAARGAFRGIVDYTELPLVSMDFNHDPHSAIVD 298          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: E4PD_YERPA (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=epd PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.874e-30
Identity = 75/234 (32.05%), Postives = 125/234 (53.42%), Query Frame = 1
Query:   31 TLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA---DAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFD 723
            +L +   +I++  + +  ++PW + G+D V++ SGV+ +     AH+  GAKKV+ + P     DA + V GVN +  +    IVSNASCTTNC+ P+ +++   +GI  G +             D    +D R  R ASQ+IIP  T  A  + ++ P    +   ++ RVPT NV+ +DL+  +       +V   ++ A+ G+ +GI+ YT+  +VS DF  D  S+I D
Sbjct:   67 SLYVGDDIIRLIHQSEIEQLPWSELGIDVVLDCSGVYGSREDGEAHVASGAKKVLFAHPGGHDLDATV-VYGVNHQDLRAEHRIVSNASCTTNCIIPIIQLLDIAYGIESGTVTTIHSSMNDQPVIDAYH-QDLRRTRAASQSIIPVDTKLAAGITRIFPKFCDRFEAISVRVPTINVTAIDLSVSVTHPVGVAEVNQLLQKAARGAFRGIVDYTELPLVSMDFNHDPHSAIVD 298          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: E4PD_VIBFM (D-erythrose-4-phosphate dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=epd PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.607e-30
Identity = 75/225 (33.33%), Postives = 112/225 (49.78%), Query Frame = 1
Query:   55 IKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADA--PMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFD 723
            +++  + D + +PW    VD +++ +GV+ + A    H+  GAKKV+ S P         + GVN  T  P   IVSN SCTTNC+ P+ K + + FGI  G +             D     D R  R ASQ+IIP  T   K + ++ P  + K   ++ RVPT NV+ +DL+  +       D+   I  AS  +L  I+ YT+  +VS DF  D  S+I D
Sbjct:   79 VRILHQADLSLLPWQSLEVDLILDCTGVYGSKADGEKHINAGAKKVLFSHPGGSDLDNTIIYGVNHDTLLPEHRIVSNGSCTTNCIIPVIKAIDDAFGIDSGTITTIHSSMNDQQVIDAYH-SDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTNVKVNDINQTIVNASRCTLHNIVDYTEAPLVSIDFNHDPHSAIVD 302          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: E4PD_ERWCT (D-erythrose-4-phosphate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=epd PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.607e-30
Identity = 76/226 (33.63%), Postives = 121/226 (53.54%), Query Frame = 1
Query:   55 IKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA---DAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFD 723
            I++  + +  ++PW +  VD V++ SGV+ +     AH+  GAKKV+ S P     DA + V GVN    +    IVSNASCTTNC+ P+ K++ + FGI  G +             D     D R  R ASQ+IIP  T  +  + ++ P    +   ++ RVPT NV+ +DL+  + K  +  ++ A ++ ++  S +GI+ YT+  +VS DF  D  S+I D
Sbjct:   75 IRLLHQVEIQQLPWRELSVDIVLDCSGVYGSREDGEAHLAAGAKKVLFSHPGTTDLDATV-VFGVNHDRLESGHRIVSNASCTTNCIIPVIKLLDDAFGIENGTVTTIHSSMNDQPVIDAYH-HDLRRTRAASQSIIPVDTKLSAGITRIFPQFVDRFEAISVRVPTINVTAIDLSVSVRKAVNVNEINALLQKSAHESFRGIVDYTELPLVSADFNHDPHSAIVD 298          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: E4PD_VIBF1 (D-erythrose-4-phosphate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=epd PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.472e-29
Identity = 75/225 (33.33%), Postives = 112/225 (49.78%), Query Frame = 1
Query:   55 IKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADA--PMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFD 723
            +++  + D + +PW    VD V++ +GV+ + +    H+  GAKKV+ S P         + GVN  T  P   IVSN SCTTNC+ P+ K + + FGI  G +             D     D R  R ASQ+IIP  T   K + ++ P  + K   ++ RVPT NV+ +DL+  +       D+   I  AS  +L  I+ YT+  +VS DF  D  S+I D
Sbjct:   79 VRILHQADLSLLPWQSLEVDLVLDCTGVYGSKSDGEKHITAGAKKVLFSHPGGSDLDNTIIYGVNHDTLLPEHRIVSNGSCTTNCIIPVIKAIDDAFGIDSGTITTIHSSMNDQQVIDAYH-SDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTNVKVNDINQTIVNASRCTLHNIVDYTEAPLVSIDFNHDPHSAIVD 302          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: E4PD_EDWI9 (D-erythrose-4-phosphate dehydrogenase OS=Edwardsiella ictaluri (strain 93-146) GN=epd PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.922e-29
Identity = 82/236 (34.75%), Postives = 120/236 (50.85%), Query Frame = 1
Query:   25 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA---DAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFD 723
            D  L I    I++  +   A++PW    VD V+E SGV+ + A   AH+  GA KV+ S P     DA + V GVN+++      IVSNASCTTNC+ P+ K++ + F I  G +             D     D R  R AS +IIP  T  A  + +VLP    +   ++ RVPT NV+ +DL+  +      E V   ++ A+  +  GI+ YT+  +VS DF  D  S+I D
Sbjct:   65 DDWLWIGDDRIRLLHRPQIADLPWEALQVDVVLECSGVYGSRADGEAHLLAGAGKVLFSHPGGHDLDATV-VYGVNQESLLAEHRIVSNASCTTNCIIPVIKLLDDAFAIESGAVTTIHSSMNDQQVIDAYH-PDLRRTRAASHSIIPVDTKLAAGIARVLPQFRDRFEAISVRVPTLNVTAIDLSVSVRTPVRVEQVNHLLQKAASTAFHGIVDYTELPLVSTDFNHDPHSAIVD 298          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: G3P_HELPY (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori GN=gapA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.511e-29
Identity = 81/210 (38.57%), Postives = 117/210 (55.71%), Query Frame = 1
Query:  106 GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP------SADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSI 717
            GVD ++E SG F        ++  GAKKV++SAP          P  V GVN   Y+ N  IVSNASCTTN +AP+  ++ + F I EG++             D     D R  R A+ NIIP++T AA A+ KVLP+L  K+ G + RVP+ +VS++DL+  L K A  + +   +  AS+G LKG+L    ++ VS+DF+ +  S I
Sbjct:   85 GVDVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFCYQ-NQAIVSNASCTTNAIAPICAILDKAFKIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVI 293          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: G3P_HELPJ (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori J99 GN=gapA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.279e-29
Identity = 89/243 (36.63%), Postives = 130/243 (53.50%), Query Frame = 1
Query:   10 HHVVDDSTLEINGKLIKVFSKRDPAEIPWGDY-GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP------SADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSI 717
            H +++      NGKLI + S   P      D  GV  ++E SG F        ++  GAKKV++SAP          P  V GVN   Y+ N  IVSNASCTTN +AP+  ++ + F I EG++             D     D R  R A+ NIIP++T AA A+ KVLP+L  K+ G + RVP+ +VS++DL+  L K A  + +   +  AS+G+LKG+L    ++ VS+DF+ +  S I
Sbjct:   53 HGLLNKEVRYSNGKLI-IGSLEIPVFNSIKDLKGVGVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFLYQ-NQAIVSNASCTTNAIAPICAILDKAFSIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKALKDPINDLLITASKGTLKGVLEIDLKERVSSDFISNPNSVI 293          
The following BLAST results are available for this feature:
BLAST of CN192358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
E4PD_YERPN3.874e-3032.05D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_YERPE3.874e-3032.05D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_YERPA3.874e-3032.05D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_VIBFM6.607e-3033.33D-erythrose-4-phosphate dehydrogenase OS=Vibrio fi... [more]
E4PD_ERWCT6.607e-3033.63D-erythrose-4-phosphate dehydrogenase OS=Erwinia c... [more]
E4PD_VIBF11.472e-2933.33D-erythrose-4-phosphate dehydrogenase OS=Vibrio fi... [more]
E4PD_EDWI91.922e-2934.75D-erythrose-4-phosphate dehydrogenase OS=Edwardsie... [more]
G3P_HELPY2.511e-2938.57Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
G3P_HELPJ3.279e-2936.63Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006M05_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006M05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192358 ID=CN192358; Name=CN192358; organism=Citrus sinensis; type=EST; length=726bp
TTTAGGGACCATCATGTCGTGGATGACTCCACCTTAGAAATTAATGGGAA
GCTGATTAAAGTTTTCAGCAAAAGGGACCCGGCAGAGATCCCTTGGGGTG
ACTATGGGGTTGATTATGTTGTTGAATCTTCTGGAGTCTTTACAACAATT
GCGAAGGCTTCAGCTCACATGAAGGGTGGTGCAAAAAAGGTGGTAATATC
AGCTCCATCAGCTGATGCACCAATGTTTGTGGTAGGAGTGAATGAAAAGA
CATACAAGCCAAACATGAACATTGTTTCTAATGCAAGTTGTACTACCAAT
TGTCTTGCTCCTCTTGCTAAGGTGGTTCATGAGGAGTTTGGAATTCTTGA
AGGCTTAATGACCACTGTTCATGCAACTACAGCTACACAAAAGACTGTAG
ATGGTCCTTCGATGAAGGATTGGAGAGGAGGGCGTGGAGCTTCACAAAAT
ATCATTCCTAGTTCAACTGGTGCTGCCAAGGCTGTTGGTAAAGTTCTTCC
AGATCTCAACGGAAAGCTTACTGGCATGGCCTTCCGTGTCCCAACTCCTA
ATGTGTCTGTTGTGGACTTGACTTGTCGACTTGCAAAGGGTGCTTCCTAT
GAAGATGTCAAAGCCGCCATAAAGTATGCATCGGAGGGTTCACTGAAAGG
CATTCTTGGATACACAGATGAAGATGTTGTCTCTAATGACTTTGTTGGAG
ACTCGAGGTCAAGTATATTTGATGCG
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