CN192339

Overview
NameCN192339
Unique NameCN192339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_NATPD (Acidic ribosomal protein P0 homolog OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.901e-16
Identity = 48/162 (29.63%), Postives = 81/162 (50.00%), Query Frame = -3
Query:  322 EEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFP 804
            +++ + K  AP   G VAP D+V+P G+TG+DP       Q +    +I  G+++++    ++  G++V S  + +L++LGI P   GL ++ V   G ++SPE LD+  +       S  S    L++   YPT   AP M   A     +V L+     P
Sbjct:  102 QQLEESKTPAPINAGEVAPNDIVIPEGDTGVDPGPFVGDLQQVGANARIEGGSIKVVEDSTVLSAGEEVSSDLSNVLSELGIEPKEVGLDLRGVSSEGVLFSPEELDIDVESYRTDIESAASAARNLSVNAEYPTARTAPSMLAKAAGEAKSVGLSAAVESP 263          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_HALMA (50S ribosomal protein L10E OS=Haloarcula marismortui GN=rplP0 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.901e-16
Identity = 47/163 (28.83%), Postives = 85/163 (52.15%), Query Frame = -3
Query:  319 EEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 804
            +E+   K  AP   G VAP D+V+P G+TG+DP       Q +    +I +G++++++   ++  G++V    + +L +LGI P   GL +++V+ +G ++ PE L+L  D+      +       L++   YPT   AP M  +A  N  ++AL      P+
Sbjct:  103 QELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSARGNAKSLALQAAIEDPE 265          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_THEGJ (Acidic ribosomal protein P0 homolog OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.442e-16
Identity = 50/157 (31.85%), Postives = 74/157 (47.13%), Query Frame = -3
Query:  319 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 786
            K  APA+ G V P DVV+P G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+  +Y+P+VL + E + +            L++  +YPT      +   AY     VA+   Y  P+
Sbjct:  106 KTPAPAKPGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVTIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDDIIYTPDVLAIDEQEYINMLQQAYMHAFNLSVNTAYPTKQTIEAIIQKAYLGAKNVAVEAGYITPE 262          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METTL (Acidic ribosomal protein P0 homolog OS=Methanococcus thermolithotrophicus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.440e-15
Identity = 47/153 (30.72%), Postives = 80/153 (52.29%), Query Frame = -3
Query:  331 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 786
            K  AP + G VAP D+ V  G+TG+ P       + + IP  I KG + I     + + G+ V    A +L+ LGI+P + GL + + YE+G +Y+P+VL + E++ V+K     S    L++  + PT      +   A+ N  AV++ + +
Sbjct:  112 KSPAPIKGGAVAPCDIEVKAGSTGMPPGPFLGELKSVGIPAAIEKGKIGIKEDKVVAKAGEVVSHKLAVVLSALGIKPVTVGLNLLAAYEDGVIYTPDVLKIDEEEFVQKIQDAYSKAFNLSVNAAIPTAQTIETLLQKAFANARAVSIESAF 264          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_META3 (Acidic ribosomal protein P0 homolog OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.190e-15
Identity = 44/153 (28.76%), Postives = 80/153 (52.29%), Query Frame = -3
Query:  331 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 786
            K  AP + G +AP D+VV  G+TG+ P       +   +P  I+KG + I     ++++G+ V    A +L+ LGI+P   GL + + YE+G VY+ +VL + E++ V+   S  +    L++  + PT      +   A+    AV++ + +
Sbjct:  111 KAPAPIKAGAIAPSDIVVEAGSTGMPPGPFLGELKGAGLPAVIDKGKIAIKDDTVIVKEGEVVSPKVAVVLSALGIKPTKVGLDLLAAYEDGIVYTSDVLKIDEEEFVQNIQSAFTSAFNLSVNAAIPTTETIETILQKAFTEAKAVSIESAF 263          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_HALVO (Acidic ribosomal protein P0 homolog OS=Halobacterium volcanii GN=rplP0 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.190e-15
Identity = 48/162 (29.63%), Postives = 77/162 (47.53%), Query Frame = -3
Query:  322 EEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFP 804
            +E+   K  AP   G VAP D+V+P G+TG+DP       Q +    +I  G++ +     ++ +G++V    A +LA+LGI P   GL ++ V+  G ++ P+ L +  D+      S     T L++   YPT   AP +   A     AV L      P
Sbjct:  103 KELEASKTPAPINAGEVAPNDIVIPEGDTGVDPGPFVGELQQVGASARIMDGSIMVTEDSNVLSEGEEVSEELANVLAELGIEPKEVGLDLRGVFSEGVLFEPDELAIDVDEYRADIQSASPAATNLSVNAVYPTAQTAPTLIAKATSEAKAVGLFANIESP 264          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_HALSA (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarium GN=rplP0 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.190e-15
Identity = 43/162 (26.54%), Postives = 80/162 (49.38%), Query Frame = -3
Query:  322 EEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFP 804
            +++   K  AP   G VAP D+VVP G+TG+DP       Q +    +I +G+++++    +  +G+ V    + +L++LGI P   GL ++ V+  G +++PE L++  D+      S  +    L++  +YPT   AP +         ++ L      P
Sbjct:  103 QQLENSKTPAPINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSELGIEPKEVGLDLRGVFSEGVLFTPEELEIDVDEYRADIQSAAASARNLSVNAAYPTERTAPDLIAKGRGEAKSLGLQASVESP 264          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_HALS3 (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.190e-15
Identity = 43/162 (26.54%), Postives = 80/162 (49.38%), Query Frame = -3
Query:  322 EEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFP 804
            +++   K  AP   G VAP D+VVP G+TG+DP       Q +    +I +G+++++    +  +G+ V    + +L++LGI P   GL ++ V+  G +++PE L++  D+      S  +    L++  +YPT   AP +         ++ L      P
Sbjct:  103 QQLENSKTPAPINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSELGIEPKEVGLDLRGVFSEGVLFTPEELEIDVDEYRADIQSAAASARNLSVNAAYPTERTAPDLIAKGRGEAKSLGLQASVESP 264          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_PICTO (Acidic ribosomal protein P0 homolog OS=Picrophilus torridus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.472e-15
Identity = 46/155 (29.68%), Postives = 80/155 (51.61%), Query Frame = -3
Query:  331 KYKVGAPARVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 792
            K K  APA+ G +A  D+V+ P  T   P  + S FQ   +P  I KG + I + V  ++KGD +   +A +L  L I P + GL + + YE+G +++ +VL +S++ ++   AS      +LA+  ++      P M   AY    ++A+   +
Sbjct:  100 KSKTKAPAKGGEIAEEDIVIEPKETNFPPGPKISEFQKAGLPAAIEKGKIVIKSEVTFVKKGDVITREKALVLKDLEIYPITAGLDLIAAYEDGLIFNKDVLSISDEKIMSDLASAFLGAKSLAIEANFIVPEIVPDMISKAYLEAQSLAIEANF 254          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METST (Acidic ribosomal protein P0 homolog OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.219e-14
Identity = 41/149 (27.52%), Postives = 81/149 (54.36%), Query Frame = -3
Query:  343 KVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVAL 786
            K  APA+ G +AP D+VVP G+T   P       Q + IP KI+KG++ +    +++ +G+++  + A +L KL I P   G+ + +V E  ++Y+ +VL + E++ ++  A+       L++        +AP +   A ++ + +A+
Sbjct:  102 KTEAPAKAGSIAPADIVVPAGDTSFPPGPILGELQQVGIPAKIDKGSIVVTDDAKIVDEGEEIPKAVADILTKLEIHPMEVGIDLLAVCEGDTIYTADVLAIDEEETIQTLANAYQSAINLSVYAGILNSESAPLLIQKAARDALNLAI 250          
The following BLAST results are available for this feature:
BLAST of CN192339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RLA0_NATPD2.901e-1629.63Acidic ribosomal protein P0 homolog OS=Natronomona... [more]
RLA0_HALMA2.901e-1628.8350S ribosomal protein L10E OS=Haloarcula marismort... [more]
RLA0_THEGJ8.442e-1631.85Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_METTL1.440e-1530.72Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_META34.190e-1528.76Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_HALVO4.190e-1529.63Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_HALSA4.190e-1526.54Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_HALS34.190e-1526.54Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_PICTO5.472e-1529.68Acidic ribosomal protein P0 homolog OS=Picrophilus... [more]
RLA0_METST1.219e-1427.52Acidic ribosomal protein P0 homolog OS=Methanospha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0006L19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192339 ID=CN192339; Name=CN192339; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTTTGTCCTAATAAAGGATTATATAAAATAAAAAGGA
AACTGAGTCTACAAAAAGCATTAAGAAAATAAAGCAAACAAAACCAAAAA
CATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCAC
TTAGTCGAACAAGCTGAAGCCCATATCTCCATCAGACTCCTCAGCAGGCT
CTTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACCG
CCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGTA
CTCCTTCACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAGCAA
CAGCAACCACATTCTTGTATGCATTGATGAACATGTGTGGAGCAGCTGCC
AGGGTTGGGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATACACC
TGAGGCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCTG
GGCTGTAGACAGAACCGTTTTCATAGACAGACTGGACAACAAGACCATAA
GAGAAGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATCC
CACCTTGTCACCCTTCCTGATAAGCTCCACAGGTGTGATAATTTCAACAG
TACCCTTGTTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAGGAGGTC
TGGGAGGGGTCGAGACCTGTGTTGCCGGGAGGAACAACCACATCAATTGG
AGCAACCAAACCAACACGAGCAGGAGCTCCAACCTTGTACTTAGCAACCT
CCTCTT
back to top