CN192339
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_NATPD (Acidic ribosomal protein P0 homolog OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rplP0 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.901e-16 Identity = 48/162 (29.63%), Postives = 81/162 (50.00%), Query Frame = -3 Query: 322 EEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFP 804 +++ + K AP G VAP D+V+P G+TG+DP Q + +I G+++++ ++ G++V S + +L++LGI P GL ++ V G ++SPE LD+ + S S L++ YPT AP M A +V L+ P Sbjct: 102 QQLEESKTPAPINAGEVAPNDIVIPEGDTGVDPGPFVGDLQQVGANARIEGGSIKVVEDSTVLSAGEEVSSDLSNVLSELGIEPKEVGLDLRGVSSEGVLFSPEELDIDVESYRTDIESAASAARNLSVNAEYPTARTAPSMLAKAAGEAKSVGLSAAVESP 263
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_HALMA (50S ribosomal protein L10E OS=Haloarcula marismortui GN=rplP0 PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.901e-16 Identity = 47/163 (28.83%), Postives = 85/163 (52.15%), Query Frame = -3 Query: 319 EEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 804 +E+ K AP G VAP D+V+P G+TG+DP Q + +I +G++++++ ++ G++V + +L +LGI P GL +++V+ +G ++ PE L+L D+ + L++ YPT AP M +A N ++AL P+ Sbjct: 103 QELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSARGNAKSLALQAAIEDPE 265
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_THEGJ (Acidic ribosomal protein P0 homolog OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rplP0 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 8.442e-16 Identity = 50/157 (31.85%), Postives = 74/157 (47.13%), Query Frame = -3 Query: 319 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 786 K APA+ G V P DVV+P G T L P Q L IP +I KG V I +++ G+ + A +L LGI P GL + + YE+ +Y+P+VL + E + + L++ +YPT + AY VA+ Y P+ Sbjct: 106 KTPAPAKPGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVTIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDDIIYTPDVLAIDEQEYINMLQQAYMHAFNLSVNTAYPTKQTIEAIIQKAYLGAKNVAVEAGYITPE 262
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METTL (Acidic ribosomal protein P0 homolog OS=Methanococcus thermolithotrophicus GN=rplP0 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.440e-15 Identity = 47/153 (30.72%), Postives = 80/153 (52.29%), Query Frame = -3 Query: 331 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 786 K AP + G VAP D+ V G+TG+ P + + IP I KG + I + + G+ V A +L+ LGI+P + GL + + YE+G +Y+P+VL + E++ V+K S L++ + PT + A+ N AV++ + + Sbjct: 112 KSPAPIKGGAVAPCDIEVKAGSTGMPPGPFLGELKSVGIPAAIEKGKIGIKEDKVVAKAGEVVSHKLAVVLSALGIKPVTVGLNLLAAYEDGVIYTPDVLKIDEEEFVQKIQDAYSKAFNLSVNAAIPTAQTIETLLQKAFANARAVSIESAF 264
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_META3 (Acidic ribosomal protein P0 homolog OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rplP0 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.190e-15 Identity = 44/153 (28.76%), Postives = 80/153 (52.29%), Query Frame = -3 Query: 331 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 786 K AP + G +AP D+VV G+TG+ P + +P I+KG + I ++++G+ V A +L+ LGI+P GL + + YE+G VY+ +VL + E++ V+ S + L++ + PT + A+ AV++ + + Sbjct: 111 KAPAPIKAGAIAPSDIVVEAGSTGMPPGPFLGELKGAGLPAVIDKGKIAIKDDTVIVKEGEVVSPKVAVVLSALGIKPTKVGLDLLAAYEDGIVYTSDVLKIDEEEFVQNIQSAFTSAFNLSVNAAIPTTETIETILQKAFTEAKAVSIESAF 263
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_HALVO (Acidic ribosomal protein P0 homolog OS=Halobacterium volcanii GN=rplP0 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.190e-15 Identity = 48/162 (29.63%), Postives = 77/162 (47.53%), Query Frame = -3 Query: 322 EEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFP 804 +E+ K AP G VAP D+V+P G+TG+DP Q + +I G++ + ++ +G++V A +LA+LGI P GL ++ V+ G ++ P+ L + D+ S T L++ YPT AP + A AV L P Sbjct: 103 KELEASKTPAPINAGEVAPNDIVIPEGDTGVDPGPFVGELQQVGASARIMDGSIMVTEDSNVLSEGEEVSEELANVLAELGIEPKEVGLDLRGVFSEGVLFEPDELAIDVDEYRADIQSASPAATNLSVNAVYPTAQTAPTLIAKATSEAKAVGLFANIESP 264
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_HALSA (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarium GN=rplP0 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.190e-15 Identity = 43/162 (26.54%), Postives = 80/162 (49.38%), Query Frame = -3 Query: 322 EEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFP 804 +++ K AP G VAP D+VVP G+TG+DP Q + +I +G+++++ + +G+ V + +L++LGI P GL ++ V+ G +++PE L++ D+ S + L++ +YPT AP + ++ L P Sbjct: 103 QQLENSKTPAPINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSELGIEPKEVGLDLRGVFSEGVLFTPEELEIDVDEYRADIQSAAASARNLSVNAAYPTERTAPDLIAKGRGEAKSLGLQASVESP 264
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_HALS3 (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rplP0 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.190e-15 Identity = 43/162 (26.54%), Postives = 80/162 (49.38%), Query Frame = -3 Query: 322 EEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFP 804 +++ K AP G VAP D+VVP G+TG+DP Q + +I +G+++++ + +G+ V + +L++LGI P GL ++ V+ G +++PE L++ D+ S + L++ +YPT AP + ++ L P Sbjct: 103 QQLENSKTPAPINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSELGIEPKEVGLDLRGVFSEGVLFTPEELEIDVDEYRADIQSAAASARNLSVNAAYPTERTAPDLIAKGRGEAKSLGLQASVESP 264
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_PICTO (Acidic ribosomal protein P0 homolog OS=Picrophilus torridus GN=rplP0 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.472e-15 Identity = 46/155 (29.68%), Postives = 80/155 (51.61%), Query Frame = -3 Query: 331 KYKVGAPARVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 792 K K APA+ G +A D+V+ P T P + S FQ +P I KG + I + V ++KGD + +A +L L I P + GL + + YE+G +++ +VL +S++ ++ AS +LA+ ++ P M AY ++A+ + Sbjct: 100 KSKTKAPAKGGEIAEEDIVIEPKETNFPPGPKISEFQKAGLPAAIEKGKIVIKSEVTFVKKGDVITREKALVLKDLEIYPITAGLDLIAAYEDGLIFNKDVLSISDEKIMSDLASAFLGAKSLAIEANFIVPEIVPDMISKAYLEAQSLAIEANF 254
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METST (Acidic ribosomal protein P0 homolog OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rplP0 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.219e-14 Identity = 41/149 (27.52%), Postives = 81/149 (54.36%), Query Frame = -3 Query: 343 KVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVAL 786 K APA+ G +AP D+VVP G+T P Q + IP KI+KG++ + +++ +G+++ + A +L KL I P G+ + +V E ++Y+ +VL + E++ ++ A+ L++ +AP + A ++ + +A+ Sbjct: 102 KTEAPAKAGSIAPADIVVPAGDTSFPPGPILGELQQVGIPAKIDKGSIVVTDDAKIVDEGEEIPKAVADILTKLEIHPMEVGIDLLAVCEGDTIYTADVLAIDEEETIQTLANAYQSAINLSVYAGILNSESAPLLIQKAARDALNLAI 250 The following BLAST results are available for this feature:
BLAST of CN192339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CN192339 ID=CN192339; Name=CN192339; organism=Citrus sinensis; type=EST; length=806bpback to top |