CN192339

Overview
NameCN192339
Unique NameCN192339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METVS (Acidic ribosomal protein P0 homolog OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rplP0 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 46/153 (30.07%), Postives = 80/153 (52.29%), Query Frame = -3
Query:  331 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 786
            K  AP + G +AP D+ V  G+TG+ P    S  + + IP  I+KG + I     + ++GD +    A +L+ LGI+P + GL V  VYE G +Y+ +VL + E++ + K     +    L++    PT A    +   A+ +  AV++ + +
Sbjct:  112 KSPAPIKGGAIAPCDIEVKSGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVAKEGDVISPKLAVVLSALGIKPVTVGLNVLGVYEEGVIYTSDVLRIDEEEFLGKLQKAYTNAFNLSVNAVIPTSATIETIVQKAFNDAKAVSVESAF 264          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METS3 (Acidic ribosomal protein P0 homolog OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 42/149 (28.19%), Postives = 78/149 (52.35%), Query Frame = -3
Query:  343 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVAL 786
            K  APA+ G +A  D+V+P G+TG +P       Q + IP KI+KG + +     L+  G++V ++ A+ L+++ I P   G+ +++VYE  ++Y+ EVL + E+  +    +       L++  + PT      +   AY   + V +
Sbjct:  104 KTSAPAKPGAIATDDIVIPEGDTGFEPGPFLGELQQVGIPAKIDKGKIVVSKETVLVEAGEEVSAAVASTLSRMDINPMEVGIDLRAVYEEEAIYTSEVLAIDEEQTLADVQNAFRNAFNLSVNAAIPTEETISTIITLAYTRAINVGV 252          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METM6 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.716e-14
Identity = 46/153 (30.07%), Postives = 79/153 (51.63%), Query Frame = -3
Query:  331 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 786
            K  AP + G  AP D+ V  G+TG+ P    S  + + IP  I+KG + I     +I++G+ V    A +L+ LGI+P + GL V  VYE+G +Y+   L + E++ + K     +    L++    PT A    +   A+ +  AV++ + +
Sbjct:  112 KSPAPVKGGATAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVIKEGEVVSQKLAVVLSALGIKPVTVGLNVLGVYEDGVIYTESELRIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METM5 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14
Identity = 43/153 (28.10%), Postives = 80/153 (52.29%), Query Frame = -3
Query:  331 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 786
            K  AP + G VAP D+ +  G+TG+ P    S  + + +P  I+KG + I     ++++G+ V    + +L+ LGI+P + GL V  VYE+G +Y+   L + E++ + K     +    L++    PT A    +   A+ +  AV++ + +
Sbjct:  112 KSPAPVKGGAVAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIDKGKIGIKEDTVVVKEGEVVSQKLSVVLSALGIKPVTVGLNVLGVYEDGIIYTESDLKIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METM7 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.632e-14
Identity = 45/153 (29.41%), Postives = 79/153 (51.63%), Query Frame = -3
Query:  331 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 786
            K  AP + G  AP D+ V  G+TG+ P    S  + + IP  I+KG + I     ++++G+ V    A +L+ LGI+P + GL V  VYE+G +Y+   L + E++ + K     +    L++    PT A    +   A+ +  AV++ + +
Sbjct:  112 KSPAPVKGGATAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVVKEGEVVSQKLAVVLSALGIKPVTVGLNVLGVYEDGVIYTESDLKIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATIETIVQKAFNDAKAVSVESAF 264          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_THEVO (Acidic ribosomal protein P0 homolog OS=Thermoplasma volcanium GN=rplP0 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.901e-14
Identity = 49/163 (30.06%), Postives = 80/163 (49.08%), Query Frame = -3
Query:  292 APARVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLA 777
            A  R G VAP D+ V P  TG  P    + FQ + + T + KG + I     L++KG+ +   +A ++A L I+P   GL +  +Y +G +YS +VL L+ + + E+ A G +    ++ A  +        +   A   V A A A    F   + +KE+LA
Sbjct:  105 ASPRGGEVAPADITVEPMVTGFPPGPMMTEFQKVGLQTGVEKGKIAIKKEAVLVKKGEVIPKDKAKIMAMLDIKPLEVGLELLGLYSDGVLYSADVLSLTPEKIAEQMAIGYAQALQISKASMFFVAEVLKDLIAEA--KVKADAFAVAAQFITEENLKEFLA 265          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METMP (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.032e-13
Identity = 45/153 (29.41%), Postives = 79/153 (51.63%), Query Frame = -3
Query:  331 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 786
            K  AP + G +AP D+ V  G+TG+ P    S  + + IP  I+KG + I     ++++G+ V    A +L+ L I+P + GL V  VYE+G +Y+   L + E++ V K     +    L++    PT A    +   A+ +  AV++ + +
Sbjct:  112 KSPAPVKGGAIAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKIVVKEGEVVSQKLAVVLSALDIKPVTVGLNVLGVYEDGVIYTESDLKIDEEEFVGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METTH (Acidic ribosomal protein P0 homolog OS=Methanobacterium thermoautotrophicum GN=rplP0 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 39/123 (31.71%), Postives = 67/123 (54.47%), Query Frame = -3
Query:  421 KVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALAL 786
            K  APA+ G +AP D+VVP G+TG  P       Q + IP KI KG + +     +++ G+++    A +L +L I+P   G+ +++ YEN +VY+ +VL + E+  +       S    L++
Sbjct:  104 KTPAPAKPGAIAPDDIVVPKGDTGFAPGPILGELQQIGIPAKIEKGKIVVSNDHVVVKAGEEIPPKVAGILTRLDIQPLEVGIDLRAAYENQTVYTADVLTIDEEKTLSDIQKAFSQAFNLSV 226          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_THEAC (Acidic ribosomal protein P0 homolog OS=Thermoplasma acidophilum GN=rplP0 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.122e-13
Identity = 48/159 (30.19%), Postives = 76/159 (47.80%), Query Frame = -3
Query:  295 RVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYL 768
            R G +AP D+V+ P  TG  P    + FQ + + T + KG + I      ++KG+ +   +A +L  L I+P   GL +  +Y  G VYS EVL L+ + +    A+  S   A+A +  +        +   A   + A ALA    F   D VK++L
Sbjct:  108 RGGEIAPEDIVIQPMTTGFPPGPMMTEFQKVGLQTGVEKGKIAIKKETVFVKKGETIPKDKAKILEMLEIKPLEVGLQLLGLYSEGVVYSKEVLSLTPERIANDMAAAFSQAKAIAKSSMFFVDEVLRDLLAEA--KIKADALALAGQFITEDNVKDFL 264          
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METBF (Acidic ribosomal protein P0 homolog OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.490e-12
Identity = 42/141 (29.79%), Postives = 65/141 (46.10%), Query Frame = -3
Query:  367 KVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAY 786
            K  +P + G +AP D++V  G T   P       Q   IP  I+ G V +     + + G+ V    A +L KL I P   GL +++VY+NG++Y PE+L + E                LA+  +YPT A    +   A+
Sbjct:  108 KTPSPIKGGAIAPADIIVQKGPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEVVSQKLATMLTKLEIYPLIVGLDLRAVYDNGAIYEPELLAIDESQYFSDITRAAQSAFNLAVNTAYPTSATIGTLLAKAF 248          
The following BLAST results are available for this feature:
BLAST of CN192339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RLA0_METVS1.592e-1430.07Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METS31.592e-1428.19Acidic ribosomal protein P0 homolog OS=Methanobrev... [more]
RLA0_METM62.716e-1430.07Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METM53.547e-1428.10Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METM74.632e-1429.41Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_THEVO7.901e-1430.06Acidic ribosomal protein P0 homolog OS=Thermoplasm... [more]
RLA0_METMP1.032e-1329.41Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METTH1.348e-1331.71Acidic ribosomal protein P0 homolog OS=Methanobact... [more]
RLA0_THEAC5.122e-1330.19Acidic ribosomal protein P0 homolog OS=Thermoplasm... [more]
RLA0_METBF1.490e-1229.79Acidic ribosomal protein P0 homolog OS=Methanosarc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006L19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192339 ID=CN192339; Name=CN192339; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTTTGTCCTAATAAAGGATTATATAAAATAAAAAGGA
AACTGAGTCTACAAAAAGCATTAAGAAAATAAAGCAAACAAAACCAAAAA
CATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCAC
TTAGTCGAACAAGCTGAAGCCCATATCTCCATCAGACTCCTCAGCAGGCT
CTTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACCG
CCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGTA
CTCCTTCACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAGCAA
CAGCAACCACATTCTTGTATGCATTGATGAACATGTGTGGAGCAGCTGCC
AGGGTTGGGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATACACC
TGAGGCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCTG
GGCTGTAGACAGAACCGTTTTCATAGACAGACTGGACAACAAGACCATAA
GAGAAGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATCC
CACCTTGTCACCCTTCCTGATAAGCTCCACAGGTGTGATAATTTCAACAG
TACCCTTGTTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAGGAGGTC
TGGGAGGGGTCGAGACCTGTGTTGCCGGGAGGAACAACCACATCAATTGG
AGCAACCAAACCAACACGAGCAGGAGCTCCAACCTTGTACTTAGCAACCT
CCTCTT
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