CN192339
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METVS (Acidic ribosomal protein P0 homolog OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rplP0 PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14 Identity = 46/153 (30.07%), Postives = 80/153 (52.29%), Query Frame = -3 Query: 331 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 786 K AP + G +AP D+ V G+TG+ P S + + IP I+KG + I + ++GD + A +L+ LGI+P + GL V VYE G +Y+ +VL + E++ + K + L++ PT A + A+ + AV++ + + Sbjct: 112 KSPAPIKGGAIAPCDIEVKSGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVAKEGDVISPKLAVVLSALGIKPVTVGLNVLGVYEEGVIYTSDVLRIDEEEFLGKLQKAYTNAFNLSVNAVIPTSATIETIVQKAFNDAKAVSVESAF 264
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METS3 (Acidic ribosomal protein P0 homolog OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rplP0 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14 Identity = 42/149 (28.19%), Postives = 78/149 (52.35%), Query Frame = -3 Query: 343 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVAL 786 K APA+ G +A D+V+P G+TG +P Q + IP KI+KG + + L+ G++V ++ A+ L+++ I P G+ +++VYE ++Y+ EVL + E+ + + L++ + PT + AY + V + Sbjct: 104 KTSAPAKPGAIATDDIVIPEGDTGFEPGPFLGELQQVGIPAKIDKGKIVVSKETVLVEAGEEVSAAVASTLSRMDINPMEVGIDLRAVYEEEAIYTSEVLAIDEEQTLADVQNAFRNAFNLSVNAAIPTEETISTIITLAYTRAINVGV 252
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METM6 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rplP0 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.716e-14 Identity = 46/153 (30.07%), Postives = 79/153 (51.63%), Query Frame = -3 Query: 331 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 786 K AP + G AP D+ V G+TG+ P S + + IP I+KG + I +I++G+ V A +L+ LGI+P + GL V VYE+G +Y+ L + E++ + K + L++ PT A + A+ + AV++ + + Sbjct: 112 KSPAPVKGGATAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVIKEGEVVSQKLAVVLSALGIKPVTVGLNVLGVYEDGVIYTESELRIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METM5 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rplP0 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14 Identity = 43/153 (28.10%), Postives = 80/153 (52.29%), Query Frame = -3 Query: 331 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 786 K AP + G VAP D+ + G+TG+ P S + + +P I+KG + I ++++G+ V + +L+ LGI+P + GL V VYE+G +Y+ L + E++ + K + L++ PT A + A+ + AV++ + + Sbjct: 112 KSPAPVKGGAVAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIDKGKIGIKEDTVVVKEGEVVSQKLSVVLSALGIKPVTVGLNVLGVYEDGIIYTESDLKIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METM7 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rplP0 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.632e-14 Identity = 45/153 (29.41%), Postives = 79/153 (51.63%), Query Frame = -3 Query: 331 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 786 K AP + G AP D+ V G+TG+ P S + + IP I+KG + I ++++G+ V A +L+ LGI+P + GL V VYE+G +Y+ L + E++ + K + L++ PT A + A+ + AV++ + + Sbjct: 112 KSPAPVKGGATAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVVKEGEVVSQKLAVVLSALGIKPVTVGLNVLGVYEDGVIYTESDLKIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATIETIVQKAFNDAKAVSVESAF 264
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_THEVO (Acidic ribosomal protein P0 homolog OS=Thermoplasma volcanium GN=rplP0 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 7.901e-14 Identity = 49/163 (30.06%), Postives = 80/163 (49.08%), Query Frame = -3 Query: 292 APARVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLA 777 A R G VAP D+ V P TG P + FQ + + T + KG + I L++KG+ + +A ++A L I+P GL + +Y +G +YS +VL L+ + + E+ A G + ++ A + + A V A A A F + +KE+LA Sbjct: 105 ASPRGGEVAPADITVEPMVTGFPPGPMMTEFQKVGLQTGVEKGKIAIKKEAVLVKKGEVIPKDKAKIMAMLDIKPLEVGLELLGLYSDGVLYSADVLSLTPEKIAEQMAIGYAQALQISKASMFFVAEVLKDLIAEA--KVKADAFAVAAQFITEENLKEFLA 265
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METMP (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis GN=rplP0 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.032e-13 Identity = 45/153 (29.41%), Postives = 79/153 (51.63%), Query Frame = -3 Query: 331 KVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 786 K AP + G +AP D+ V G+TG+ P S + + IP I+KG + I ++++G+ V A +L+ L I+P + GL V VYE+G +Y+ L + E++ V K + L++ PT A + A+ + AV++ + + Sbjct: 112 KSPAPVKGGAIAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKIVVKEGEVVSQKLAVVLSALDIKPVTVGLNVLGVYEDGVIYTESDLKIDEEEFVGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METTH (Acidic ribosomal protein P0 homolog OS=Methanobacterium thermoautotrophicum GN=rplP0 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13 Identity = 39/123 (31.71%), Postives = 67/123 (54.47%), Query Frame = -3 Query: 421 KVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALAL 786 K APA+ G +AP D+VVP G+TG P Q + IP KI KG + + +++ G+++ A +L +L I+P G+ +++ YEN +VY+ +VL + E+ + S L++ Sbjct: 104 KTPAPAKPGAIAPDDIVVPKGDTGFAPGPILGELQQIGIPAKIEKGKIVVSNDHVVVKAGEEIPPKVAGILTRLDIQPLEVGIDLRAAYENQTVYTADVLTIDEEKTLSDIQKAFSQAFNLSV 226
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_THEAC (Acidic ribosomal protein P0 homolog OS=Thermoplasma acidophilum GN=rplP0 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.122e-13 Identity = 48/159 (30.19%), Postives = 76/159 (47.80%), Query Frame = -3 Query: 295 RVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYL 768 R G +AP D+V+ P TG P + FQ + + T + KG + I ++KG+ + +A +L L I+P GL + +Y G VYS EVL L+ + + A+ S A+A + + + A + A ALA F D VK++L Sbjct: 108 RGGEIAPEDIVIQPMTTGFPPGPMMTEFQKVGLQTGVEKGKIAIKKETVFVKKGETIPKDKAKILEMLEIKPLEVGLQLLGLYSEGVVYSKEVLSLTPERIANDMAAAFSQAKAIAKSSMFFVDEVLRDLLAEA--KIKADALALAGQFITEDNVKDFL 264
BLAST of CN192339 vs. ExPASy Swiss-Prot
Match: RLA0_METBF (Acidic ribosomal protein P0 homolog OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rplP0 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.490e-12 Identity = 42/141 (29.79%), Postives = 65/141 (46.10%), Query Frame = -3 Query: 367 KVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAY 786 K +P + G +AP D++V G T P Q IP I+ G V + + + G+ V A +L KL I P GL +++VY+NG++Y PE+L + E LA+ +YPT A + A+ Sbjct: 108 KTPSPIKGGAIAPADIIVQKGPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEVVSQKLATMLTKLEIYPLIVGLDLRAVYDNGAIYEPELLAIDESQYFSDITRAAQSAFNLAVNTAYPTSATIGTLLAKAF 248 The following BLAST results are available for this feature:
BLAST of CN192339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CN192339 ID=CN192339; Name=CN192339; organism=Citrus sinensis; type=EST; length=806bpback to top |