CN192320

Overview
NameCN192320
Unique NameCN192320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192320 vs. ExPASy Swiss-Prot
Match: GPI8_BOVIN (GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 55/190 (28.95%), Postives = 82/190 (43.16%), Query Frame = 1
Query:    4 AFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTET 555
            A N  NP+P  + +H       +GDDV      DY   +VTVENF  V+ G   + T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++      Y  L+F ++ C+  S++E       NI A  +S   E S           P P     L D Y+   +E  +  N  ++T
Sbjct:   91 ACNPRNPKPATVYSHKNMELNVYGDDV----EVDYRSYEVTVENFLRVLTGRIPSSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSP--NIMALASSQVGEDSLSHQ-------PDPAVGVHLMDRYTFYVLEFLEEINPASQT 266          
BLAST of CN192320 vs. ExPASy Swiss-Prot
Match: GPI8_PONAB (GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 55/190 (28.95%), Postives = 81/190 (42.63%), Query Frame = 1
Query:    4 AFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTET 555
            A N  NP+P  + +H       +GDDV      DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++      Y  L+F ++ C+  S++E       NI A  +S   E S           P P     L D Y+   +E  +  N  ++T
Sbjct:   91 ACNPRNPKPATVFSHKNMELNVYGDDV----EVDYRSYEVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSP--NIMALASSQVGEDSLSHQ-------PDPAIGVHLMDRYTFYVLEFLEEINPASQT 266          
BLAST of CN192320 vs. ExPASy Swiss-Prot
Match: GPI8_HUMAN (GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 55/190 (28.95%), Postives = 81/190 (42.63%), Query Frame = 1
Query:    4 AFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTET 555
            A N  NP+P  + +H       +GDDV      DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++      Y  L+F ++ C+  S++E       NI A  +S   E S           P P     L D Y+   +E  +  N  ++T
Sbjct:   91 ACNPRNPKPATVFSHKNMELNVYGDDV----EVDYRSYEVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSP--NIMALASSQVGEDSLSHQ-------PDPAIGVHLMDRYTFYVLEFLEEINPASQT 266          
The following BLAST results are available for this feature:
BLAST of CN192320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
GPI8_BOVIN2.927e-1128.95GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2... [more]
GPI8_PONAB3.823e-1128.95GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE... [more]
GPI8_HUMAN3.823e-1128.95GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006L07_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192320 ID=CN192320; Name=CN192320; organism=Citrus sinensis; type=EST; length=704bp
GAGGCTTTCAATGAAGAGAACCCAAGGCCTGGAGTCATCATTAACCACCC
CCATGGCGATGATGTTTACAAAGGAGTTCCAAAGGATTACACGGGGGAAG
ATGTTACTGTTGAAAACTTTTTTGCTGTTATCCTGGGAAATAAAACAGCT
CTTACAGGGGGCAGTGGGAAGGTTGTGGATAGCGGCCCCAATGATCATAT
TTTCATATTCTACTCAGATCATGGTGGCCCTGGGGTGCTAGGGATGCCCA
CCAGTCGATACATATATGCTGATGAACTGATCGATGTCTTAAAAAAGAAG
CATGCTTCTGGGAACTACAAAAGCTTGGTATTTTATCTCGAAGCCTGTGA
ATCTGGAAGTATCTTTGAGGGTCTTCTTCCTGAGGGCTTAAATATCTATG
CAACCACAGCTTCAAATGCTGAAGAGAGCAGTTGGGGGACCTATTGTCCT
GGAGAGATTCCTGGTCCTCCCCCTGAATATAGCACTTGTTTGGGTGACTT
GTATAGTATTGCTTGGATGGAGGACAGTGACATACACAACTTGCGGACAG
AAACTCTTCACCAGCAGTATGAACTGGTTAAAACAAGGACTGCTAGTTAC
AATTCGTATGGCTCTCATGTCATGCAATATGGTGATATCGGTCTTAGCAA
GAACAATCTCTTCACGTACTTGGGTACAAATCCTGCAAATGATAACTACA
CTTT
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